A B C D E F G H I L M N O R S T U V W X _

A

ABS - Static variable in class com.ggasoftware.indigo.Indigo

addAtom(String) - Method in class com.ggasoftware.indigo.IndigoObject

addBond(IndigoObject, int) - Method in class com.ggasoftware.indigo.IndigoObject

addCatalyst(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

addConstraint(String, String) - Method in class com.ggasoftware.indigo.IndigoObject

addConstraintNot(String, String) - Method in class com.ggasoftware.indigo.IndigoObject

addConstraintOr(String, String) - Method in class com.ggasoftware.indigo.IndigoObject

addDataSGroup(int[], int[], String, String) - Method in class com.ggasoftware.indigo.IndigoObject

addDataSGroup(Collection<Integer>, Collection<Integer>, String, String) - Method in class com.ggasoftware.indigo.IndigoObject

addDecomposition(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

addProduct(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

addReactant(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

addRSite(String) - Method in class com.ggasoftware.indigo.IndigoObject

addStereocenter(int, int, int, int) - Method in class com.ggasoftware.indigo.IndigoObject

addStereocenter(int, int, int, int, int) - Method in class com.ggasoftware.indigo.IndigoObject

alignAtoms(int[], float[]) - Method in class com.ggasoftware.indigo.IndigoObject

alignAtoms(Collection<Integer>, Collection<Float>) - Method in class com.ggasoftware.indigo.IndigoObject

ALLENE - Static variable in class com.ggasoftware.indigo.Indigo

allScaffolds() - Method in class com.ggasoftware.indigo.IndigoObject

AND - Static variable in class com.ggasoftware.indigo.Indigo

append(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

aromatize() - Method in class com.ggasoftware.indigo.IndigoObject

arrayAdd(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

at(int) - Method in class com.ggasoftware.indigo.IndigoObject

atomicNumber() - Method in class com.ggasoftware.indigo.IndigoObject

atomMappingNumber(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

automap() - Method in class com.ggasoftware.indigo.IndigoObject

automap(String) - Method in class com.ggasoftware.indigo.IndigoObject

B

bond() - Method in class com.ggasoftware.indigo.IndigoObject

bondOrder() - Method in class com.ggasoftware.indigo.IndigoObject

bondStereo() - Method in class com.ggasoftware.indigo.IndigoObject

C

canonicalSmiles() - Method in class com.ggasoftware.indigo.IndigoObject

CHAIN - Static variable in class com.ggasoftware.indigo.Indigo

changeStereocenterType(int) - Method in class com.ggasoftware.indigo.IndigoObject

charge() - Method in class com.ggasoftware.indigo.IndigoObject

checkAmbiguousH() - Method in class com.ggasoftware.indigo.IndigoObject

checkBadValence() - Method in class com.ggasoftware.indigo.IndigoObject

checkResult(Object, int) - Static method in class com.ggasoftware.indigo.Indigo

checkResult(Object, Object, int) - Static method in class com.ggasoftware.indigo.Indigo

checkResultFloat(Object, float) - Static method in class com.ggasoftware.indigo.Indigo

checkResultPointer(Object, Pointer) - Static method in class com.ggasoftware.indigo.Indigo

checkResultString(Object, Pointer) - Static method in class com.ggasoftware.indigo.Indigo

CIS - Static variable in class com.ggasoftware.indigo.Indigo

clear() - Method in class com.ggasoftware.indigo.IndigoObject

clearAAM() - Method in class com.ggasoftware.indigo.IndigoObject

clearAlleneCenters() - Method in class com.ggasoftware.indigo.IndigoObject

clearAttachmentPoints() - Method in class com.ggasoftware.indigo.IndigoObject

clearCisTrans() - Method in class com.ggasoftware.indigo.IndigoObject

clearProperties() - Method in class com.ggasoftware.indigo.IndigoObject

clearStereocenters() - Method in class com.ggasoftware.indigo.IndigoObject

clearTautomerRules() - Method in class com.ggasoftware.indigo.Indigo

clone() - Method in class com.ggasoftware.indigo.IndigoObject

close() - Method in class com.ggasoftware.indigo.IndigoObject

cml() - Method in class com.ggasoftware.indigo.IndigoObject

cmlAppend(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

cmlFooter() - Method in class com.ggasoftware.indigo.IndigoObject

cmlHeader() - Method in class com.ggasoftware.indigo.IndigoObject

com.ggasoftware.indigo - package com.ggasoftware.indigo

commonBits(IndigoObject, IndigoObject) - Method in class com.ggasoftware.indigo.Indigo

component(int) - Method in class com.ggasoftware.indigo.IndigoObject

componentIndex() - Method in class com.ggasoftware.indigo.IndigoObject

correctReactingCenters() - Method in class com.ggasoftware.indigo.IndigoObject

count() - Method in class com.ggasoftware.indigo.IndigoObject

countAlleneCenters() - Method in class com.ggasoftware.indigo.IndigoObject

countAtoms() - Method in class com.ggasoftware.indigo.IndigoObject

countAttachmentPoints() - Method in class com.ggasoftware.indigo.IndigoObject

countBits() - Method in class com.ggasoftware.indigo.IndigoObject

countBonds() - Method in class com.ggasoftware.indigo.IndigoObject

countCatalysts() - Method in class com.ggasoftware.indigo.IndigoObject

countComponents() - Method in class com.ggasoftware.indigo.IndigoObject

countDataSGroups() - Method in class com.ggasoftware.indigo.IndigoObject

countGenericSGroups() - Method in class com.ggasoftware.indigo.IndigoObject

countHeavyAtoms() - Method in class com.ggasoftware.indigo.IndigoObject

countHydrogens() - Method in class com.ggasoftware.indigo.IndigoObject

countImplicitHydrogens() - Method in class com.ggasoftware.indigo.IndigoObject

countMatches(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

countMatchesWithLimit(IndigoObject, int) - Method in class com.ggasoftware.indigo.IndigoObject

countMolecules() - Method in class com.ggasoftware.indigo.IndigoObject

countMultipleGroups() - Method in class com.ggasoftware.indigo.IndigoObject

countProducts() - Method in class com.ggasoftware.indigo.IndigoObject

countPseudoatoms() - Method in class com.ggasoftware.indigo.IndigoObject

countReactants() - Method in class com.ggasoftware.indigo.IndigoObject

countReferences() - Method in class com.ggasoftware.indigo.Indigo

countRepeatingUnits() - Method in class com.ggasoftware.indigo.IndigoObject

countRSites() - Method in class com.ggasoftware.indigo.IndigoObject

countSSSR() - Method in class com.ggasoftware.indigo.IndigoObject

countStereocenters() - Method in class com.ggasoftware.indigo.IndigoObject

countSuperatoms() - Method in class com.ggasoftware.indigo.IndigoObject

createArray() - Method in class com.ggasoftware.indigo.Indigo

createDecomposer(IndigoObject) - Method in class com.ggasoftware.indigo.Indigo

createEdgeSubmolecule(int[], int[]) - Method in class com.ggasoftware.indigo.IndigoObject

createEdgeSubmolecule(Collection<Integer>, Collection<Integer>) - Method in class com.ggasoftware.indigo.IndigoObject

createFileSaver(String, String) - Method in class com.ggasoftware.indigo.Indigo

createMolecule() - Method in class com.ggasoftware.indigo.Indigo

createQueryMolecule() - Method in class com.ggasoftware.indigo.Indigo

createQueryReaction() - Method in class com.ggasoftware.indigo.Indigo

createReaction() - Method in class com.ggasoftware.indigo.Indigo

createSaver(IndigoObject, String) - Method in class com.ggasoftware.indigo.Indigo

createSubmolecule(int[]) - Method in class com.ggasoftware.indigo.IndigoObject

createSubmolecule(Collection<Integer>) - Method in class com.ggasoftware.indigo.IndigoObject

D

data() - Method in class com.ggasoftware.indigo.IndigoObject

dbgBreakpoint() - Method in class com.ggasoftware.indigo.Indigo

dbgInternalType() - Method in class com.ggasoftware.indigo.IndigoObject

dearomatize() - Method in class com.ggasoftware.indigo.IndigoObject

decomposedMoleculeHighlighted() - Method in class com.ggasoftware.indigo.IndigoObject

decomposedMoleculeScaffold() - Method in class com.ggasoftware.indigo.IndigoObject

decomposedMoleculeWithRGroups() - Method in class com.ggasoftware.indigo.IndigoObject

decomposeMolecule(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

decomposeMolecules(IndigoObject, IndigoObject) - Method in class com.ggasoftware.indigo.Indigo

Deprecated.

decomposeMolecules(IndigoObject, Collection<IndigoObject>) - Method in class com.ggasoftware.indigo.Indigo

Deprecated.

degree() - Method in class com.ggasoftware.indigo.IndigoObject

description() - Method in class com.ggasoftware.indigo.IndigoObject

destination() - Method in class com.ggasoftware.indigo.IndigoObject

dispatcher - Variable in class com.ggasoftware.indigo.IndigoObject

dispose() - Method in class com.ggasoftware.indigo.IndigoObject

DOUBLET - Static variable in class com.ggasoftware.indigo.Indigo

DOWN - Static variable in class com.ggasoftware.indigo.Indigo

E

EITHER - Static variable in class com.ggasoftware.indigo.Indigo

exactMatch(IndigoObject, IndigoObject, String) - Method in class com.ggasoftware.indigo.Indigo

exactMatch(IndigoObject, IndigoObject) - Method in class com.ggasoftware.indigo.Indigo

expandAbbreviations() - Method in class com.ggasoftware.indigo.IndigoObject

explicitValence() - Method in class com.ggasoftware.indigo.IndigoObject

extractCommonScaffold(IndigoObject, String) - Method in class com.ggasoftware.indigo.Indigo

extractCommonScaffold(Collection<IndigoObject>, String) - Method in class com.ggasoftware.indigo.Indigo

extractFromJar(Class, String, String) - Static method in class com.ggasoftware.indigo.Indigo

F

finalize() - Method in class com.ggasoftware.indigo.Indigo

finalize() - Method in class com.ggasoftware.indigo.IndigoObject

fingerprint() - Method in class com.ggasoftware.indigo.IndigoObject

fingerprint(String) - Method in class com.ggasoftware.indigo.IndigoObject

foldHydrogens() - Method in class com.ggasoftware.indigo.IndigoObject

G

getAtom(int) - Method in class com.ggasoftware.indigo.IndigoObject

getBond(int) - Method in class com.ggasoftware.indigo.IndigoObject

getDataSGroup(int) - Method in class com.ggasoftware.indigo.IndigoObject

getGenericSGroup(int) - Method in class com.ggasoftware.indigo.IndigoObject

getIndigo() - Method in class com.ggasoftware.indigo.IndigoObject

getLibrary() - Static method in class com.ggasoftware.indigo.Indigo

getMolecule(int) - Method in class com.ggasoftware.indigo.IndigoObject

getMultipleGroup(int) - Method in class com.ggasoftware.indigo.IndigoObject

getOs() - Static method in class com.ggasoftware.indigo.Indigo

getPlatformDependentPath() - Static method in class com.ggasoftware.indigo.Indigo

getProperty(String) - Method in class com.ggasoftware.indigo.IndigoObject

getRepeatingUnit(int) - Method in class com.ggasoftware.indigo.IndigoObject

getSid() - Method in class com.ggasoftware.indigo.Indigo

getSubmolecule(int[]) - Method in class com.ggasoftware.indigo.IndigoObject

getSubmolecule(Collection<Integer>) - Method in class com.ggasoftware.indigo.IndigoObject

getSuperatom(int) - Method in class com.ggasoftware.indigo.IndigoObject

getUserSpecifiedPath() - Method in class com.ggasoftware.indigo.Indigo

grossFormula() - Method in class com.ggasoftware.indigo.IndigoObject

H

hasCoord() - Method in class com.ggasoftware.indigo.IndigoObject

hasNext() - Method in class com.ggasoftware.indigo.IndigoObject

hasProperty(String) - Method in class com.ggasoftware.indigo.IndigoObject

hasZCoord() - Method in class com.ggasoftware.indigo.IndigoObject

highlight() - Method in class com.ggasoftware.indigo.IndigoObject

highlightedTarget() - Method in class com.ggasoftware.indigo.IndigoObject

I

ignoreAtom(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

index() - Method in class com.ggasoftware.indigo.IndigoObject

Indigo - Class in com.ggasoftware.indigo

Indigo(String) - Constructor for class com.ggasoftware.indigo.Indigo

Indigo() - Constructor for class com.ggasoftware.indigo.Indigo

indigoAddAtom(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAddBond(int, int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAddCatalyst(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAddConstraint(int, String, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAddConstraintNot(int, String, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAddConstraintOr(int, String, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAddDataSGroup(int, int, int[], int, int[], String, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAddDecomposition(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAddProduct(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAddReactant(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAddRSite(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAddStereocenter(int, int, int, int, int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAlignAtoms(int, int, int[], float[]) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAllocSessionId() - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAllScaffolds(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAppend(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAromatize(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoArrayAdd(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAt(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAtomicNumber(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoAutomap(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoBond(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoBondOrder(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoBondStereo(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCanonicalSmiles(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoChangeStereocenterType(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCheckAmbiguousH(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCheckBadValence(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoClear(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoClearAAM(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoClearAlleneCenters(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoClearAttachmentPoints(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoClearCisTrans(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoClearProperties(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoClearStereocenters(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoClearTautomerRules() - Method in interface com.ggasoftware.indigo.IndigoLib

indigoClone(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoClose(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCml(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCmlAppend(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCmlFooter(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCmlHeader(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCommonBits(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoComponent(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoComponentIndex(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCorrectReactingCenters(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCount(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountAlleneCenters(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountAtoms(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountAttachmentPoints(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountBits(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountBonds(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountCatalysts(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountComponents(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountDataSGroups(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountGenericSGroups(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountHeavyAtoms(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountHydrogens(int, IntByReference) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountImplicitHydrogens(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountMatches(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountMatchesWithLimit(int, int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountMolecules(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountMultipleGroups(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountProducts(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountPseudoatoms(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountReactants(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountReferences() - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountRepeatingUnits(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountRSites(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountSSSR(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountStereocenters(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCountSuperatoms(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCreateArray() - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCreateDecomposer(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCreateEdgeSubmolecule(int, int, int[], int, int[]) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCreateFileSaver(String, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCreateMolecule() - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCreateQueryMolecule() - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCreateQueryReaction() - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCreateReaction() - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCreateSaver(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoCreateSubmolecule(int, int, int[]) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoData(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoDbgBreakpoint() - Method in interface com.ggasoftware.indigo.IndigoLib

indigoDbgInternalType(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoDearomatize(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoDecomposedMoleculeHighlighted(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoDecomposedMoleculeScaffold(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoDecomposedMoleculeWithRGroups(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoDecomposeMolecule(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoDecomposeMolecules(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoDegree(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoDescription(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoDestination(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoExactMatch(int, int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

IndigoException - Exception in com.ggasoftware.indigo

IndigoException(Object, String) - Constructor for exception com.ggasoftware.indigo.IndigoException

indigoExpandAbbreviations(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoExtractCommonScaffold(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoFingerprint(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoFoldHydrogens(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoFree(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoGetAtom(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoGetAtomMappingNumber(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoGetBond(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoGetCharge(int, IntByReference) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoGetDataSGroup(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoGetExplicitValence(int, IntByReference) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoGetGenericSGroup(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoGetLastError() - Method in interface com.ggasoftware.indigo.IndigoLib

indigoGetMolecule(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoGetMultipleGroup(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoGetProperty(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoGetRadical(int, IntByReference) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoGetRadicalElectrons(int, IntByReference) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoGetReactingCenter(int, int, IntByReference) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoGetRepeatingUnit(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoGetSubmolecule(int, int, int[]) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoGetSuperatom(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoGrossFormula(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoHasCoord(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoHasNext(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoHasProperty(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoHasZCoord(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoHighlight(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoHighlightedTarget(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIgnoreAtom(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIndex(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoInvertStereo(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIsChiral(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIsHighlighted(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIsotope(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIsPseudoatom(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIsRSite(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateAlleneCenters(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateArray(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateAtoms(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateAttachmentPoints(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateBonds(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateCatalysts(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateCML(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateCMLFile(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateComponents(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateDataSGroups(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateDecomposedMolecules(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateDecompositions(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateEdgeSubmolecules(int, int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateGenericSGroups(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateMatches(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateMolecules(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateMultipleGroups(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateNeighbors(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateProducts(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateProperties(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIteratePseudoatoms(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateRDF(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateRDFile(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateReactants(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateRepeatingUnits(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateRGroupFragments(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateRGroups(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateRings(int, int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateRSites(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateSDF(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateSDFile(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateSmiles(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateSmilesFile(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateSSSR(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateStereocenters(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateSubtrees(int, int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoIterateSuperatoms(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLayeredCode(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLayout(int) - Method in interface com.ggasoftware.indigo.IndigoLib

IndigoLib - Interface in com.ggasoftware.indigo

indigoLoadBuffer(byte[], int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadMolecule(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadMoleculeFromBuffer(byte[], int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadMoleculeFromFile(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadMoleculeFromString(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadQueryMolecule(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadQueryMoleculeFromBuffer(byte[], int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadQueryMoleculeFromFile(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadQueryMoleculeFromString(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadQueryReaction(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadQueryReactionFromBuffer(byte[], int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadQueryReactionFromFile(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadQueryReactionFromString(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadReaction(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadReactionFromBuffer(byte[], int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadReactionFromFile(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadReactionFromString(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadReactionSmarts(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadReactionSmartsFromBuffer(byte[], int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadReactionSmartsFromFile(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadReactionSmartsFromString(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadSmarts(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadSmartsFromBuffer(byte[], int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadSmartsFromFile(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadSmartsFromString(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoLoadString(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoMapAtom(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoMapBond(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoMapMolecule(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoMarkEitherCisTrans(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoMarkStereobonds(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoMatch(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoMerge(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoMolecularWeight(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoMolfile(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoMonoisotopicMass(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoMostAbundantMass(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoName(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoNext(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoNormalize(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

IndigoObject - Class in com.ggasoftware.indigo

IndigoObject(Indigo, int) - Constructor for class com.ggasoftware.indigo.IndigoObject

IndigoObject(Indigo, int, Object) - Constructor for class com.ggasoftware.indigo.IndigoObject

indigoOptimize(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoRawData(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoRdfAppend(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoRdfHeader(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoReactionProductEnumerate(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoReadFile(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoReleaseSessionId(long) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoRemove(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoRemoveAtoms(int, int, int[]) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoRemoveBonds(int, int, int[]) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoRemoveConstraints(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoRemoveProperty(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoRemoveTautomerRule(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoResetAtom(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoResetCharge(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoResetExplicitValence(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoResetIsotope(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoResetRadical(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoResetStereo(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoResetSymmetricCisTrans(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoResetSymmetricStereocenters(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoRxnfile(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSaveCml(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSaveCmlToFile(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSaveMDLCT(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSaveMolfile(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSaveMolfileToFile(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSaveRxnfile(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSaveRxnfileToFile(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSdfAppend(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSerialize(int, PointerByReference, IntByReference) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetAtomMappingNumber(int, int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetAttachmentPoint(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetBondOrder(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetCharge(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetDataSGroupXY(int, float, float, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetExplicitValence(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetImplicitHCount(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetIsotope(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetName(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetOption(String, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetOptionBool(String, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetOptionColor(String, float, float, float) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetOptionFloat(String, float) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetOptionInt(String, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetOptionXY(String, int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetProperty(int, String, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetRadical(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetReactingCenter(int, int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetRSite(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetSessionId(long) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetStereocenterGroup(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetTautomerRule(int, String, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSetXYZ(int, float, float, float) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSimilarity(int, int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSingleAllowedRGroup(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSmiles(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSmilesAppend(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSource(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoStereocenterGroup(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoStereocenterPyramid(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoStereocenterType(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSubstructureMatcher(int, String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSymbol(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoSymmetryClasses(int, IntByReference) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoTell(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoToBuffer(int, PointerByReference, IntByReference) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoTopology(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoToString(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoTransform(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoUnfoldHydrogens(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoUnhighlight(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoUnignoreAllAtoms(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoUnignoreAtom(int, int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoUnserialize(byte[], int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoValence(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoValidateChirality(int) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoVersion() - Method in interface com.ggasoftware.indigo.IndigoLib

indigoWriteBuffer() - Method in interface com.ggasoftware.indigo.IndigoLib

indigoWriteFile(String) - Method in interface com.ggasoftware.indigo.IndigoLib

indigoXYZ(int) - Method in interface com.ggasoftware.indigo.IndigoLib

invertStereo() - Method in class com.ggasoftware.indigo.IndigoObject

isChiral() - Method in class com.ggasoftware.indigo.IndigoObject

isHighlighted() - Method in class com.ggasoftware.indigo.IndigoObject

isotope() - Method in class com.ggasoftware.indigo.IndigoObject

isPseudoatom() - Method in class com.ggasoftware.indigo.IndigoObject

isRSite() - Method in class com.ggasoftware.indigo.IndigoObject

iterateAlleneCenters() - Method in class com.ggasoftware.indigo.IndigoObject

iterateArray() - Method in class com.ggasoftware.indigo.IndigoObject

iterateAtoms() - Method in class com.ggasoftware.indigo.IndigoObject

iterateAttachmentPoints(int) - Method in class com.ggasoftware.indigo.IndigoObject

iterateBonds() - Method in class com.ggasoftware.indigo.IndigoObject

iterateCatalysts() - Method in class com.ggasoftware.indigo.IndigoObject

iterateCML(IndigoObject) - Method in class com.ggasoftware.indigo.Indigo

iterateCMLFile(String) - Method in class com.ggasoftware.indigo.Indigo

iterateComponents() - Method in class com.ggasoftware.indigo.IndigoObject

iterateDataSGroups() - Method in class com.ggasoftware.indigo.IndigoObject

iterateDecomposedMolecules() - Method in class com.ggasoftware.indigo.IndigoObject

Deprecated.

iterateDecompositions() - Method in class com.ggasoftware.indigo.IndigoObject

iterateEdgeSubmolecules(int, int) - Method in class com.ggasoftware.indigo.IndigoObject

iterateGenericSGroups() - Method in class com.ggasoftware.indigo.IndigoObject

iterateMatches(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

iterateMolecules() - Method in class com.ggasoftware.indigo.IndigoObject

iterateMultipleGroups() - Method in class com.ggasoftware.indigo.IndigoObject

iterateNeighbors() - Method in class com.ggasoftware.indigo.IndigoObject

iterateProducts() - Method in class com.ggasoftware.indigo.IndigoObject

iterateProperties() - Method in class com.ggasoftware.indigo.IndigoObject

iteratePseudoatoms() - Method in class com.ggasoftware.indigo.IndigoObject

iterateRDF(IndigoObject) - Method in class com.ggasoftware.indigo.Indigo

iterateRDFile(String) - Method in class com.ggasoftware.indigo.Indigo

iterateReactants() - Method in class com.ggasoftware.indigo.IndigoObject

iterateRepeatingUnits() - Method in class com.ggasoftware.indigo.IndigoObject

iterateRGroupFragments() - Method in class com.ggasoftware.indigo.IndigoObject

iterateRGroups() - Method in class com.ggasoftware.indigo.IndigoObject

iterateRings(int, int) - Method in class com.ggasoftware.indigo.IndigoObject

iterateRSites() - Method in class com.ggasoftware.indigo.IndigoObject

iterateSDF(IndigoObject) - Method in class com.ggasoftware.indigo.Indigo

iterateSDFile(String) - Method in class com.ggasoftware.indigo.Indigo

iterateSmiles(IndigoObject) - Method in class com.ggasoftware.indigo.Indigo

iterateSmilesFile(String) - Method in class com.ggasoftware.indigo.Indigo

iterateSSSR() - Method in class com.ggasoftware.indigo.IndigoObject

iterateStereocenters() - Method in class com.ggasoftware.indigo.IndigoObject

iterateSubtrees(int, int) - Method in class com.ggasoftware.indigo.IndigoObject

iterateSuperatoms() - Method in class com.ggasoftware.indigo.IndigoObject

iterator() - Method in class com.ggasoftware.indigo.IndigoObject

L

layeredCode() - Method in class com.ggasoftware.indigo.IndigoObject

layout() - Method in class com.ggasoftware.indigo.IndigoObject

loadBuffer(byte[]) - Method in class com.ggasoftware.indigo.Indigo

loadMolecule(String) - Method in class com.ggasoftware.indigo.Indigo

loadMolecule(byte[]) - Method in class com.ggasoftware.indigo.Indigo

loadMoleculeFromFile(String) - Method in class com.ggasoftware.indigo.Indigo

loadQueryMolecule(String) - Method in class com.ggasoftware.indigo.Indigo

loadQueryMolecule(byte[]) - Method in class com.ggasoftware.indigo.Indigo

loadQueryMoleculeFromFile(String) - Method in class com.ggasoftware.indigo.Indigo

loadQueryReaction(String) - Method in class com.ggasoftware.indigo.Indigo

loadQueryReaction(byte[]) - Method in class com.ggasoftware.indigo.Indigo

loadQueryReactionFromFile(String) - Method in class com.ggasoftware.indigo.Indigo

loadReaction(String) - Method in class com.ggasoftware.indigo.Indigo

loadReaction(byte[]) - Method in class com.ggasoftware.indigo.Indigo

loadReactionFromFile(String) - Method in class com.ggasoftware.indigo.Indigo

loadReactionSmarts(String) - Method in class com.ggasoftware.indigo.Indigo

loadReactionSmarts(byte[]) - Method in class com.ggasoftware.indigo.Indigo

loadReactionSmartsFromFile(String) - Method in class com.ggasoftware.indigo.Indigo

loadSmarts(String) - Method in class com.ggasoftware.indigo.Indigo

loadSmarts(byte[]) - Method in class com.ggasoftware.indigo.Indigo

loadSmartsFromFile(String) - Method in class com.ggasoftware.indigo.Indigo

loadString(String) - Method in class com.ggasoftware.indigo.Indigo

M

mapAtom(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

mapBond(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

mapMolecule(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

markEitherCisTrans() - Method in class com.ggasoftware.indigo.IndigoObject

markStereobonds() - Method in class com.ggasoftware.indigo.IndigoObject

match(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

mdlct() - Method in class com.ggasoftware.indigo.IndigoObject

merge(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

molecularWeight() - Method in class com.ggasoftware.indigo.IndigoObject

molfile() - Method in class com.ggasoftware.indigo.IndigoObject

monoisotopicMass() - Method in class com.ggasoftware.indigo.IndigoObject

mostAbundantMass() - Method in class com.ggasoftware.indigo.IndigoObject

N

name() - Method in class com.ggasoftware.indigo.IndigoObject

next() - Method in class com.ggasoftware.indigo.IndigoObject

normalize() - Method in class com.ggasoftware.indigo.IndigoObject

normalize(String) - Method in class com.ggasoftware.indigo.IndigoObject

O

optimize() - Method in class com.ggasoftware.indigo.IndigoObject

optimize(String) - Method in class com.ggasoftware.indigo.IndigoObject

OR - Static variable in class com.ggasoftware.indigo.Indigo

OS_LINUX - Static variable in class com.ggasoftware.indigo.Indigo

OS_MACOS - Static variable in class com.ggasoftware.indigo.Indigo

OS_SOLARIS - Static variable in class com.ggasoftware.indigo.Indigo

OS_WINDOWS - Static variable in class com.ggasoftware.indigo.Indigo

R

radical() - Method in class com.ggasoftware.indigo.IndigoObject

radicalElectrons() - Method in class com.ggasoftware.indigo.IndigoObject

rawData() - Method in class com.ggasoftware.indigo.IndigoObject

RC_CENTER - Static variable in class com.ggasoftware.indigo.Indigo

RC_MADE_OR_BROKEN - Static variable in class com.ggasoftware.indigo.Indigo

RC_NOT_CENTER - Static variable in class com.ggasoftware.indigo.Indigo

RC_ORDER_CHANGED - Static variable in class com.ggasoftware.indigo.Indigo

RC_UNCHANGED - Static variable in class com.ggasoftware.indigo.Indigo

RC_UNMARKED - Static variable in class com.ggasoftware.indigo.Indigo

rdfAppend(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

rdfHeader() - Method in class com.ggasoftware.indigo.IndigoObject

reactingCenter(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

reactionProductEnumerate(IndigoObject, IndigoObject) - Method in class com.ggasoftware.indigo.Indigo

reactionProductEnumerate(IndigoObject, Iterable<Iterable>) - Method in class com.ggasoftware.indigo.Indigo

remove() - Method in class com.ggasoftware.indigo.IndigoObject

removeAtoms(int[]) - Method in class com.ggasoftware.indigo.IndigoObject

removeAtoms(Collection<Integer>) - Method in class com.ggasoftware.indigo.IndigoObject

removeBonds(int[]) - Method in class com.ggasoftware.indigo.IndigoObject

removeBonds(Collection<Integer>) - Method in class com.ggasoftware.indigo.IndigoObject

removeConstraints(String) - Method in class com.ggasoftware.indigo.IndigoObject

removeProperty(String) - Method in class com.ggasoftware.indigo.IndigoObject

removeTautomerRule(int) - Method in class com.ggasoftware.indigo.Indigo

resetAtom(String) - Method in class com.ggasoftware.indigo.IndigoObject

resetCharge() - Method in class com.ggasoftware.indigo.IndigoObject

resetExplicitValence() - Method in class com.ggasoftware.indigo.IndigoObject

resetIsotope() - Method in class com.ggasoftware.indigo.IndigoObject

resetRadical() - Method in class com.ggasoftware.indigo.IndigoObject

resetStereo() - Method in class com.ggasoftware.indigo.IndigoObject

resetSymmetricCisTrans() - Method in class com.ggasoftware.indigo.IndigoObject

resetSymmetricStereocenters() - Method in class com.ggasoftware.indigo.IndigoObject

RING - Static variable in class com.ggasoftware.indigo.Indigo

rxnfile() - Method in class com.ggasoftware.indigo.IndigoObject

S

saveCml(String) - Method in class com.ggasoftware.indigo.IndigoObject

saveMolfile(String) - Method in class com.ggasoftware.indigo.IndigoObject

saveRxnfile(String) - Method in class com.ggasoftware.indigo.IndigoObject

sdfAppend(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

self - Variable in class com.ggasoftware.indigo.IndigoObject

serialize() - Method in class com.ggasoftware.indigo.IndigoObject

sessionReleased() - Method in class com.ggasoftware.indigo.Indigo

setAtomMappingNumber(IndigoObject, int) - Method in class com.ggasoftware.indigo.IndigoObject

setAttachmentPoint(int) - Method in class com.ggasoftware.indigo.IndigoObject

setBondOrder(int) - Method in class com.ggasoftware.indigo.IndigoObject

setCharge(int) - Method in class com.ggasoftware.indigo.IndigoObject

setDataSGroupXY(float, float) - Method in class com.ggasoftware.indigo.IndigoObject

setDataSGroupXY(float, float, String) - Method in class com.ggasoftware.indigo.IndigoObject

setExplicitValence(int) - Method in class com.ggasoftware.indigo.IndigoObject

setImplicitHCount(int) - Method in class com.ggasoftware.indigo.IndigoObject

setIsotope(int) - Method in class com.ggasoftware.indigo.IndigoObject

setName(String) - Method in class com.ggasoftware.indigo.IndigoObject

setOption(String, String) - Method in class com.ggasoftware.indigo.Indigo

setOption(String, int) - Method in class com.ggasoftware.indigo.Indigo

setOption(String, int, int) - Method in class com.ggasoftware.indigo.Indigo

setOption(String, float, float, float) - Method in class com.ggasoftware.indigo.Indigo

setOption(String, boolean) - Method in class com.ggasoftware.indigo.Indigo

setOption(String, float) - Method in class com.ggasoftware.indigo.Indigo

setOption(String, double) - Method in class com.ggasoftware.indigo.Indigo

setProperty(String, String) - Method in class com.ggasoftware.indigo.IndigoObject

setRadical(int) - Method in class com.ggasoftware.indigo.IndigoObject

setReactingCenter(IndigoObject, int) - Method in class com.ggasoftware.indigo.IndigoObject

setRSite(String) - Method in class com.ggasoftware.indigo.IndigoObject

setSessionID() - Method in class com.ggasoftware.indigo.Indigo

setStereocenterGroup(int) - Method in class com.ggasoftware.indigo.IndigoObject

setTautomerRule(int, String, String) - Method in class com.ggasoftware.indigo.Indigo

setXYZ(float, float, float) - Method in class com.ggasoftware.indigo.IndigoObject

setXYZ(float[]) - Method in class com.ggasoftware.indigo.IndigoObject

similarity(IndigoObject, IndigoObject) - Method in class com.ggasoftware.indigo.Indigo

similarity(IndigoObject, IndigoObject, String) - Method in class com.ggasoftware.indigo.Indigo

singleAllowedRGroup() - Method in class com.ggasoftware.indigo.IndigoObject

SINGLET - Static variable in class com.ggasoftware.indigo.Indigo

smiles() - Method in class com.ggasoftware.indigo.IndigoObject

smilesAppend(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

source() - Method in class com.ggasoftware.indigo.IndigoObject

stereocenterGroup() - Method in class com.ggasoftware.indigo.IndigoObject

stereocenterPyramid() - Method in class com.ggasoftware.indigo.IndigoObject

stereocenterType() - Method in class com.ggasoftware.indigo.IndigoObject

substructureMatcher(IndigoObject, String) - Method in class com.ggasoftware.indigo.Indigo

substructureMatcher(IndigoObject) - Method in class com.ggasoftware.indigo.Indigo

symbol() - Method in class com.ggasoftware.indigo.IndigoObject

symmetryClasses() - Method in class com.ggasoftware.indigo.IndigoObject

T

tell() - Method in class com.ggasoftware.indigo.IndigoObject

toBuffer() - Method in class com.ggasoftware.indigo.IndigoObject

toFloatArray(Collection<Float>) - Static method in class com.ggasoftware.indigo.Indigo

toIndigoArray(Collection<IndigoObject>) - Method in class com.ggasoftware.indigo.Indigo

toIntArray(Collection<Integer>) - Static method in class com.ggasoftware.indigo.Indigo

topology() - Method in class com.ggasoftware.indigo.IndigoObject

toString() - Method in class com.ggasoftware.indigo.IndigoObject

TRANS - Static variable in class com.ggasoftware.indigo.Indigo

transform(IndigoObject, IndigoObject) - Method in class com.ggasoftware.indigo.Indigo

TRIPLET - Static variable in class com.ggasoftware.indigo.Indigo

U

unfoldHydrogens() - Method in class com.ggasoftware.indigo.IndigoObject

unhighlight() - Method in class com.ggasoftware.indigo.IndigoObject

unignoreAllAtoms() - Method in class com.ggasoftware.indigo.IndigoObject

unignoreAtom(IndigoObject) - Method in class com.ggasoftware.indigo.IndigoObject

unserialize(byte[]) - Method in class com.ggasoftware.indigo.Indigo

UP - Static variable in class com.ggasoftware.indigo.Indigo

V

valence() - Method in class com.ggasoftware.indigo.IndigoObject

validateChirality() - Method in class com.ggasoftware.indigo.IndigoObject

version() - Method in class com.ggasoftware.indigo.Indigo

W

writeBuffer() - Method in class com.ggasoftware.indigo.Indigo

writeFile(String) - Method in class com.ggasoftware.indigo.Indigo

X

xyz() - Method in class com.ggasoftware.indigo.IndigoObject

_

_lib - Variable in class com.ggasoftware.indigo.IndigoObject

A B C D E F G H I L M N O R S T U V W X _