picard.illumina.parser.readers

Class AbstractIlluminaPositionFileReader.PositionInfo

java.lang.Object

picard.illumina.parser.readers.AbstractIlluminaPositionFileReader.PositionInfo

Enclosing class:

AbstractIlluminaPositionFileReader

public class AbstractIlluminaPositionFileReader.PositionInfo
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
int	lane The lane, which is determined from the file name
int	tile The tile, which is determined from the file name
float	xPos The x-position as it occurs in the file being read
int	xQseqCoord The QSeq style x-coordinat, an integer = Math.round(xPos*10 + 1000)
float	yPos The y-position as it occurs in the file being read
int	yQseqCoord The QSeq style y-coordinates, an integer = Math.round(yPos*10 + 1000)

Constructor Summary

Constructors

Constructor and Description
AbstractIlluminaPositionFileReader.PositionInfo(float x, float y, int lane, int tile)

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(java.lang.Object other)

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

xPos

public final float xPos

The x-position as it occurs in the file being read

yPos

public final float yPos

The y-position as it occurs in the file being read

lane

public final int lane

The lane, which is determined from the file name

tile

public final int tile

The tile, which is determined from the file name

xQseqCoord

public final int xQseqCoord

The QSeq style x-coordinat, an integer = Math.round(xPos*10 + 1000)

yQseqCoord

public final int yQseqCoord

The QSeq style y-coordinates, an integer = Math.round(yPos*10 + 1000)

Constructor Detail

AbstractIlluminaPositionFileReader.PositionInfo

public AbstractIlluminaPositionFileReader.PositionInfo(float x,
                                               float y,
                                               int lane,
                                               int tile)

Method Detail

equals

public boolean equals(java.lang.Object other)

Overrides:

equals in class java.lang.Object