picard.vcf.processor

Class VcfFileSegment

java.lang.Object

picard.vcf.processor.VcfFileSegment

public abstract class VcfFileSegment
extends java.lang.Object

Describes a segment of a particular VCF file.

Constructor Summary

Constructors

Constructor and Description
VcfFileSegment()

Method Summary

Methods

Modifier and Type	Method and Description
abstract java.lang.String	contig()
htsjdk.samtools.util.Interval	correspondingInterval()
abstract int	start()
abstract int	stop()
java.lang.String	toString()
abstract java.io.File	vcf()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

VcfFileSegment

public VcfFileSegment()

Method Detail

start

public abstract int start()

stop

public abstract int stop()

contig

public abstract java.lang.String contig()

vcf

public abstract java.io.File vcf()

correspondingInterval

public htsjdk.samtools.util.Interval correspondingInterval()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object