picard.analysis

Interfaces

• CollectMultipleMetrics.ProgramInterface

Classes

• AlignmentSummaryMetrics
• AlignmentSummaryMetricsCollector
• BaseDistributionByCycleMetrics
• CollectAlignmentSummaryMetrics
• CollectBaseDistributionByCycle
• CollectGcBiasMetrics
• CollectInsertSizeMetrics
• CollectJumpingLibraryMetrics
• CollectMultipleMetrics
• CollectOxoGMetrics
• CollectOxoGMetrics.CpcgMetrics
• CollectQualityYieldMetrics
• CollectQualityYieldMetrics.QualityYieldMetrics
• CollectRawWgsMetrics
• CollectRawWgsMetrics.RawWgsMetrics
• CollectRnaSeqMetrics
• CollectRrbsMetrics
• CollectWgsMetrics
• CollectWgsMetrics.WgsMetrics
• CollectWgsMetricsFromQuerySorted
• CollectWgsMetricsFromQuerySorted.QuerySortedSeqMetrics
• CollectWgsMetricsFromSampledSites
• CollectWgsMetricsFromSampledSites.SampledWgsMetrics
• CompareMetrics
• GcBiasDetailMetrics
• GcBiasMetricsCollector
• GcBiasSummaryMetrics
• GcBiasUtils
• InsertSizeMetrics
• JumpingLibraryMetrics
• MeanQualityByCycle
• QualityScoreDistribution
• RnaSeqMetrics
• RrbsCpgDetailMetrics
• RrbsMetricsCollector
• RrbsSummaryMetrics
• SinglePassSamProgram

Enums

• AlignmentSummaryMetrics.Category
• CollectMultipleMetrics.Program
• MetricAccumulationLevel