picard.illumina.parser

Class MultiTileFilterParser

java.lang.Object

picard.illumina.parser.MultiTileParser<picard.illumina.parser.PfData>

picard.illumina.parser.MultiTileFilterParser

public class MultiTileFilterParser
extends MultiTileParser<picard.illumina.parser.PfData>

Read filter file that contains multiple tiles in a single file. A tile index is needed to parse this file so that {tile number, cluster number} can be converted into absolute record number in file.

Constructor Summary

Constructors

Constructor and Description
MultiTileFilterParser(TileIndex tileIndex, java.util.List<java.lang.Integer> requestedTiles, java.io.File filterFile)

Method Summary

Modifier and Type	Method and Description
void	close()

Methods inherited from class picard.illumina.parser.MultiTileParser

getTileOfNextCluster, hasNext, next, remove, seekToTile, supportedTypes, verifyData

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Iterator

forEachRemaining

Constructor Detail

MultiTileFilterParser

public MultiTileFilterParser(TileIndex tileIndex,
                             java.util.List<java.lang.Integer> requestedTiles,
                             java.io.File filterFile)

Method Detail

close

public void close()