picard.metrics

Class MultilevelMetrics

java.lang.Object

htsjdk.samtools.metrics.MetricBase

picard.metrics.MultilevelMetrics

Direct Known Subclasses:

AlignmentSummaryMetrics, GcBiasDetailMetrics, GcBiasSummaryMetrics, HsMetrics, InsertSizeMetrics, RnaSeqMetrics, RrbsCpgDetailMetrics, RrbsSummaryMetrics, TargetedPcrMetrics

public class MultilevelMetrics
extends htsjdk.samtools.metrics.MetricBase

Field Summary

Fields

Modifier and Type	Field and Description
java.lang.String	LIBRARY The library to which these metrics apply.
java.lang.String	READ_GROUP The read group to which these metrics apply.
java.lang.String	SAMPLE The sample to which these metrics apply.

Constructor Summary

Constructors

Constructor and Description
MultilevelMetrics()

Method Summary

Methods inherited from class htsjdk.samtools.metrics.MetricBase

equals, hashCode, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

SAMPLE

public java.lang.String SAMPLE

The sample to which these metrics apply. If null, it means they apply to all reads in the file.

LIBRARY

public java.lang.String LIBRARY

The library to which these metrics apply. If null, it means that the metrics were accumulated at the sample level.

READ_GROUP

public java.lang.String READ_GROUP

The read group to which these metrics apply. If null, it means that the metrics were accumulated at the library or sample level.

Constructor Detail

MultilevelMetrics

public MultilevelMetrics()