PhysicalLocation

```
public class PhysicalLocation
extends java.lang.Object
```
Small interface that provides access to the physical location information about a cluster. All values should be defaulted to -1 if unavailable. Tile should only allow non-zero positive integers, x and y coordinates must be non-negative. This is different from OpticalDuplicateFinder.PhysicalLocation in that the x and y positions are ints, not shorts thus, they do not overflow within a HiSeqX tile.

Fields
Modifier and Type	Field and Description
`static java.lang.String`	`DEFAULT_READ_NAME_REGEX`

Constructors
Constructor and Description
`PhysicalLocation()`
`PhysicalLocation(java.lang.String readNameRegExp)`

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`boolean`	`addLocationInformation(java.lang.String readName, PhysicalLocation loc)` Method used to extract tile/x/y from the read name and add it to the PhysicalLocation so that it can be used later to determine optical duplication
`short`	`getTile()`
`int`	`getX()`
`int`	`getY()`
`void`	`setTile(short tile)`
`void`	`setX(int x)`
`void`	`setY(int y)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Class PhysicalLocation