picard.vcf

Class CallingMetricAccumulator

java.lang.Object

picard.vcf.CallingMetricAccumulator

All Implemented Interfaces:

VariantProcessor.Accumulator<CallingMetricAccumulator.Result>

public class CallingMetricAccumulator
extends java.lang.Object
implements VariantProcessor.Accumulator<CallingMetricAccumulator.Result>

Collects variants and generates metrics about them. To use, construct, call accumulate(htsjdk.variant.variantcontext.VariantContext) as desired, then call result().

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	CallingMetricAccumulator.Result

Constructor Summary

Constructors

Constructor and Description
CallingMetricAccumulator(DbSnpBitSetUtil.DbSnpBitSets dbsnp)

Method Summary

Modifier and Type	Method and Description
void	accumulate(htsjdk.variant.variantcontext.VariantContext vc) Incorporates the provided variant's data into the metric analysis.
CallingMetricAccumulator.Result	result()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CallingMetricAccumulator

public CallingMetricAccumulator(DbSnpBitSetUtil.DbSnpBitSets dbsnp)

Method Detail

accumulate

public void accumulate(htsjdk.variant.variantcontext.VariantContext vc)

Incorporates the provided variant's data into the metric analysis.

Specified by:

accumulate in interface VariantProcessor.Accumulator<CallingMetricAccumulator.Result>

result

public CallingMetricAccumulator.Result result()

Specified by:

result in interface VariantProcessor.Accumulator<CallingMetricAccumulator.Result>