picard.fingerprint

Enum HaplotypeProbabilities.Genotype

java.lang.Object

java.lang.Enum<HaplotypeProbabilities.Genotype>

picard.fingerprint.HaplotypeProbabilities.Genotype

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<HaplotypeProbabilities.Genotype>

Enclosing class:

HaplotypeProbabilities

protected static enum HaplotypeProbabilities.Genotype
extends java.lang.Enum<HaplotypeProbabilities.Genotype>

Log10(P(evidence| haplotype)) for the 3 different possible haplotypes {aa, ab, bb}

Enum Constant Summary

Enum Constants

Enum Constant and Description
HET_ALLELE12
HOM_ALLELE1
HOM_ALLELE2

Method Summary

Modifier and Type	Method and Description
static HaplotypeProbabilities.Genotype	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static HaplotypeProbabilities.Genotype[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

HOM_ALLELE1

public static final HaplotypeProbabilities.Genotype HOM_ALLELE1

HET_ALLELE12

public static final HaplotypeProbabilities.Genotype HET_ALLELE12

HOM_ALLELE2

public static final HaplotypeProbabilities.Genotype HOM_ALLELE2

Method Detail

values

public static HaplotypeProbabilities.Genotype[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (HaplotypeProbabilities.Genotype c : HaplotypeProbabilities.Genotype.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static HaplotypeProbabilities.Genotype valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null