picard.sam.markduplicates.util

Class SamRecordWithOrdinalAndSetDuplicateReadFlag

java.lang.Object

htsjdk.samtools.util.SamRecordWithOrdinal

picard.sam.markduplicates.util.SamRecordWithOrdinalAndSetDuplicateReadFlag

public class SamRecordWithOrdinalAndSetDuplicateReadFlag
extends htsjdk.samtools.util.SamRecordWithOrdinal

This class sets the duplicate read flag as the result state when examining sets of records.

Constructor Summary

Constructors

Constructor and Description
SamRecordWithOrdinalAndSetDuplicateReadFlag()
SamRecordWithOrdinalAndSetDuplicateReadFlag(htsjdk.samtools.SAMRecord record, long recordIndex)

Method Summary

Modifier and Type	Method and Description
void	setResultState(boolean resultState)

Methods inherited from class htsjdk.samtools.util.SamRecordWithOrdinal

getRecord, getRecordOrdinal, setRecord, setRecordOrdinal

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SamRecordWithOrdinalAndSetDuplicateReadFlag

public SamRecordWithOrdinalAndSetDuplicateReadFlag()

SamRecordWithOrdinalAndSetDuplicateReadFlag

public SamRecordWithOrdinalAndSetDuplicateReadFlag(htsjdk.samtools.SAMRecord record,
                                                   long recordIndex)

Method Detail

setResultState

public void setResultState(boolean resultState)

Specified by:

setResultState in class htsjdk.samtools.util.SamRecordWithOrdinal