Package picard.vcf.processor

Interface Summary

Interface	Description
VariantAccumulatorExecutor<ACCUMULATOR extends VariantProcessor.Accumulator<RESULT>,RESULT>	Describes the functionality for an executor that manages the delegation of work to VariantProcessor.Accumulators.
VariantProcessor.Accumulator<RESULT>	Handles VariantContexts, and accumulates their data in some fashion internally.
VariantProcessor.AccumulatorGenerator<ACCUMULATOR extends VariantProcessor.Accumulator<RESULT>,RESULT>	Generates instances of VariantProcessor.Accumulators.
VariantProcessor.ResultMerger<RESULT>	Takes a collection of results produced by VariantProcessor.Accumulator.result() and merges them into a single RESULT.

Class Summary

Class	Description
VariantAccumulatorExecutor.MultiThreadedChunkBased<A extends VariantProcessor.Accumulator<R>,R>	A VariantAccumulatorExecutor that breaks down work into chunks described by the provided VariantIteratorProducer and spreads them over the indicated number of threads.
VariantIteratorProducer	A mechanism for iterating over CloseableIterator of VariantContexts in in some fashion, given VCF files and optionally an interval list.
VariantProcessor<RESULT,ACCUMULATOR extends VariantProcessor.Accumulator<RESULT>>	Describes an object that processes variants and produces a result.
VariantProcessor.Builder<A extends VariantProcessor.Accumulator<R>,R>	Simple builder of VariantProcessors.
VcfFileSegment	Describes a segment of a particular VCF file.
VcfFileSegmentGenerator	Describes a mechanism for producing VcfFileSegments from a VCF file.