htsjdk.samtools.cram.build

Class CompressionHeaderFactory

java.lang.Object

htsjdk.samtools.cram.build.CompressionHeaderFactory

public class CompressionHeaderFactory
extends java.lang.Object

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	CompressionHeaderFactory.EncodingLengthCalculator
static class	CompressionHeaderFactory.HuffmanParamsCalculator
static class	CompressionHeaderFactory.IntegerEncodingCalculator

Constructor Summary

Constructors

Constructor and Description
CompressionHeaderFactory()

Method Summary

Modifier and Type	Method and Description
CompressionHeader	build(java.util.List<CramCompressionRecord> records, SubstitutionMatrix substitutionMatrix, boolean sorted)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompressionHeaderFactory

public CompressionHeaderFactory()

Method Detail

build

public CompressionHeader build(java.util.List<CramCompressionRecord> records,
                               SubstitutionMatrix substitutionMatrix,
                               boolean sorted)