htsjdk.samtools.filter

Class FilteringIterator

java.lang.Object

htsjdk.samtools.filter.FilteringSamIterator

htsjdk.samtools.filter.FilteringIterator

All Implemented Interfaces:

CloseableIterator<SAMRecord>, java.io.Closeable, java.lang.AutoCloseable, java.util.Iterator<SAMRecord>

Deprecated.

@Deprecated
public class FilteringIterator
extends FilteringSamIterator

Filtering Iterator which takes a filter and an iterator and iterates through only those records which are not rejected by the filter.

$Id$

Constructor Summary

Constructors

Constructor and Description
FilteringIterator(java.util.Iterator<SAMRecord> iterator, SamRecordFilter filter) Deprecated.
FilteringIterator(java.util.Iterator<SAMRecord> iterator, SamRecordFilter filter, boolean filterByPair) Deprecated.

Method Summary

Methods inherited from class htsjdk.samtools.filter.FilteringSamIterator

close, hasNext, next, remove

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Iterator

forEachRemaining

Constructor Detail

FilteringIterator

public FilteringIterator(java.util.Iterator<SAMRecord> iterator,
                         SamRecordFilter filter,
                         boolean filterByPair)

Deprecated.

FilteringIterator

public FilteringIterator(java.util.Iterator<SAMRecord> iterator,
                         SamRecordFilter filter)

Deprecated.