htsjdk.samtools.util

Class SamLocusIterator.RecordAndOffset

java.lang.Object

htsjdk.samtools.util.SamLocusIterator.RecordAndOffset

Enclosing class:

SamLocusIterator

public static class SamLocusIterator.RecordAndOffset
extends java.lang.Object

Holds a SAMRecord plus the zero-based offset into that SAMRecord's bases and quality scores that corresponds to the base and quality at the genomic position described the containing LocusInfo.

Constructor Summary

Constructors

Constructor and Description
RecordAndOffset(SAMRecord record, int offset)

Method Summary

Modifier and Type	Method and Description
byte	getBaseQuality()
int	getOffset() Zero-based offset into the read corresponding to the current position in LocusInfo
byte	getReadBase()
SAMRecord	getRecord()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RecordAndOffset

public RecordAndOffset(SAMRecord record,
                       int offset)

Method Detail

getOffset

public int getOffset()

Zero-based offset into the read corresponding to the current position in LocusInfo

getRecord

public SAMRecord getRecord()

getReadBase

public byte getReadBase()

getBaseQuality

public byte getBaseQuality()