GenomicsDBImportConfiguration.ImportConfiguration.Builder (com.intel:genomicsdb-gatk4 0.4.0 API)

java.lang.Object
- com.google.protobuf.AbstractMessageLite.Builder<BuilderType>
- - com.google.protobuf.AbstractMessage.Builder<BuilderType>
  - - com.google.protobuf.GeneratedMessage.Builder<GenomicsDBImportConfiguration.ImportConfiguration.Builder>
    - - com.intel.genomicsdb.GenomicsDBImportConfiguration.ImportConfiguration.Builder

All Implemented Interfaces:

com.google.protobuf.Message.Builder, com.google.protobuf.MessageLite.Builder, com.google.protobuf.MessageLiteOrBuilder, com.google.protobuf.MessageOrBuilder, GenomicsDBImportConfiguration.ImportConfigurationOrBuilder, Cloneable

Enclosing class:

GenomicsDBImportConfiguration.ImportConfiguration
```
public static final class GenomicsDBImportConfiguration.ImportConfiguration.Builder
extends com.google.protobuf.GeneratedMessage.Builder<GenomicsDBImportConfiguration.ImportConfiguration.Builder>
implements GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
```
Protobuf type ImportConfiguration

Field Summary

Fields
Modifier and Type	Field and Description
`private int`	`bitField0_`
`private Object`	`callsetMappingFile_`
`private List<GenomicsDBImportConfiguration.Partition>`	`columnPartitions_`
`private com.google.protobuf.RepeatedFieldBuilder<GenomicsDBImportConfiguration.Partition,GenomicsDBImportConfiguration.Partition.Builder,GenomicsDBImportConfiguration.PartitionOrBuilder>`	`columnPartitionsBuilder_`
`private boolean`	`compressTiledbArray_`
`private boolean`	`deleteAndCreateTiledbArray_`
`private boolean`	`discardVcfIndex_`
`private boolean`	`doPingPongBuffering_`
`private long`	`numCellsPerTile_`
`private int`	`numParallelVcfFiles_`
`private boolean`	`offloadVcfOutputProcessing_`
`private boolean`	`produceCombinedVcf_`
`private boolean`	`produceTiledbArray_`
`private boolean`	`rowBasedPartitioning_`
`private long`	`segmentSize_`
`private long`	`sizePerColumnPartition_`
`private boolean`	`treatDeletionsAsIntervals_`
`private Object`	`vidMappingFile_`

Constructor Summary

Constructors
Modifier Constructor and Description

private Builder()

private Builder(com.google.protobuf.GeneratedMessage.BuilderParent parent)

Constructors
Modifier	Constructor and Description
`private`	`Builder()`
`private`	`Builder(com.google.protobuf.GeneratedMessage.BuilderParent parent)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`addAllColumnPartitions(Iterable<? extends GenomicsDBImportConfiguration.Partition> values)` `repeated .Partition column_partitions = 4;`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`addColumnPartitions(GenomicsDBImportConfiguration.Partition.Builder builderForValue)` `repeated .Partition column_partitions = 4;`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`addColumnPartitions(GenomicsDBImportConfiguration.Partition value)` `repeated .Partition column_partitions = 4;`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`addColumnPartitions(int index, GenomicsDBImportConfiguration.Partition.Builder builderForValue)` `repeated .Partition column_partitions = 4;`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`addColumnPartitions(int index, GenomicsDBImportConfiguration.Partition value)` `repeated .Partition column_partitions = 4;`
`GenomicsDBImportConfiguration.Partition.Builder`	`addColumnPartitionsBuilder()` `repeated .Partition column_partitions = 4;`
`GenomicsDBImportConfiguration.Partition.Builder`	`addColumnPartitionsBuilder(int index)` `repeated .Partition column_partitions = 4;`
`GenomicsDBImportConfiguration.ImportConfiguration`	`build()`
`GenomicsDBImportConfiguration.ImportConfiguration`	`buildPartial()`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`clear()`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`clearCallsetMappingFile()` `optional string callset_mapping_file = 6;`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`clearColumnPartitions()` `repeated .Partition column_partitions = 4;`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`clearCompressTiledbArray()` `optional bool compress_tiledb_array = 15 [default = true];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`clearDeleteAndCreateTiledbArray()` `optional bool delete_and_create_tiledb_array = 10 [default = false];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`clearDiscardVcfIndex()` `optional bool discard_vcf_index = 13 [default = true];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`clearDoPingPongBuffering()` `optional bool do_ping_pong_buffering = 11 [default = true];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`clearNumCellsPerTile()` `optional int64 num_cells_per_tile = 16 [default = 1000];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`clearNumParallelVcfFiles()` `optional int32 num_parallel_vcf_files = 9 [default = 1];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`clearOffloadVcfOutputProcessing()` `optional bool offload_vcf_output_processing = 12 [default = true];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`clearProduceCombinedVcf()` `optional bool produce_combined_vcf = 2 [default = false];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`clearProduceTiledbArray()` `optional bool produce_tiledb_array = 3 [default = true];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`clearRowBasedPartitioning()` `optional bool row_based_partitioning = 1 [default = false];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`clearSegmentSize()` `optional int64 segment_size = 14 [default = 10485760];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`clearSizePerColumnPartition()` `required int64 size_per_column_partition = 7 [default = 10240];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`clearTreatDeletionsAsIntervals()` `optional bool treat_deletions_as_intervals = 8 [default = true];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`clearVidMappingFile()` `optional string vid_mapping_file = 5;`
`private void`	`ensureColumnPartitionsIsMutable()`
`String`	`getCallsetMappingFile()` `optional string callset_mapping_file = 6;`
`com.google.protobuf.ByteString`	`getCallsetMappingFileBytes()` `optional string callset_mapping_file = 6;`
`GenomicsDBImportConfiguration.Partition`	`getColumnPartitions(int index)` `repeated .Partition column_partitions = 4;`
`GenomicsDBImportConfiguration.Partition.Builder`	`getColumnPartitionsBuilder(int index)` `repeated .Partition column_partitions = 4;`
`List<GenomicsDBImportConfiguration.Partition.Builder>`	`getColumnPartitionsBuilderList()` `repeated .Partition column_partitions = 4;`
`int`	`getColumnPartitionsCount()` `repeated .Partition column_partitions = 4;`
`private com.google.protobuf.RepeatedFieldBuilder<GenomicsDBImportConfiguration.Partition,GenomicsDBImportConfiguration.Partition.Builder,GenomicsDBImportConfiguration.PartitionOrBuilder>`	`getColumnPartitionsFieldBuilder()`
`List<GenomicsDBImportConfiguration.Partition>`	`getColumnPartitionsList()` `repeated .Partition column_partitions = 4;`
`GenomicsDBImportConfiguration.PartitionOrBuilder`	`getColumnPartitionsOrBuilder(int index)` `repeated .Partition column_partitions = 4;`
`List<? extends GenomicsDBImportConfiguration.PartitionOrBuilder>`	`getColumnPartitionsOrBuilderList()` `repeated .Partition column_partitions = 4;`
`boolean`	`getCompressTiledbArray()` `optional bool compress_tiledb_array = 15 [default = true];`
`GenomicsDBImportConfiguration.ImportConfiguration`	`getDefaultInstanceForType()`
`boolean`	`getDeleteAndCreateTiledbArray()` `optional bool delete_and_create_tiledb_array = 10 [default = false];`
`static com.google.protobuf.Descriptors.Descriptor`	`getDescriptor()`
`com.google.protobuf.Descriptors.Descriptor`	`getDescriptorForType()`
`boolean`	`getDiscardVcfIndex()` `optional bool discard_vcf_index = 13 [default = true];`
`boolean`	`getDoPingPongBuffering()` `optional bool do_ping_pong_buffering = 11 [default = true];`
`long`	`getNumCellsPerTile()` `optional int64 num_cells_per_tile = 16 [default = 1000];`
`int`	`getNumParallelVcfFiles()` `optional int32 num_parallel_vcf_files = 9 [default = 1];`
`boolean`	`getOffloadVcfOutputProcessing()` `optional bool offload_vcf_output_processing = 12 [default = true];`
`boolean`	`getProduceCombinedVcf()` `optional bool produce_combined_vcf = 2 [default = false];`
`boolean`	`getProduceTiledbArray()` `optional bool produce_tiledb_array = 3 [default = true];`
`boolean`	`getRowBasedPartitioning()` `optional bool row_based_partitioning = 1 [default = false];`
`long`	`getSegmentSize()` `optional int64 segment_size = 14 [default = 10485760];`
`long`	`getSizePerColumnPartition()` `required int64 size_per_column_partition = 7 [default = 10240];`
`boolean`	`getTreatDeletionsAsIntervals()` `optional bool treat_deletions_as_intervals = 8 [default = true];`
`String`	`getVidMappingFile()` `optional string vid_mapping_file = 5;`
`com.google.protobuf.ByteString`	`getVidMappingFileBytes()` `optional string vid_mapping_file = 5;`
`boolean`	`hasCallsetMappingFile()` `optional string callset_mapping_file = 6;`
`boolean`	`hasCompressTiledbArray()` `optional bool compress_tiledb_array = 15 [default = true];`
`boolean`	`hasDeleteAndCreateTiledbArray()` `optional bool delete_and_create_tiledb_array = 10 [default = false];`
`boolean`	`hasDiscardVcfIndex()` `optional bool discard_vcf_index = 13 [default = true];`
`boolean`	`hasDoPingPongBuffering()` `optional bool do_ping_pong_buffering = 11 [default = true];`
`boolean`	`hasNumCellsPerTile()` `optional int64 num_cells_per_tile = 16 [default = 1000];`
`boolean`	`hasNumParallelVcfFiles()` `optional int32 num_parallel_vcf_files = 9 [default = 1];`
`boolean`	`hasOffloadVcfOutputProcessing()` `optional bool offload_vcf_output_processing = 12 [default = true];`
`boolean`	`hasProduceCombinedVcf()` `optional bool produce_combined_vcf = 2 [default = false];`
`boolean`	`hasProduceTiledbArray()` `optional bool produce_tiledb_array = 3 [default = true];`
`boolean`	`hasRowBasedPartitioning()` `optional bool row_based_partitioning = 1 [default = false];`
`boolean`	`hasSegmentSize()` `optional int64 segment_size = 14 [default = 10485760];`
`boolean`	`hasSizePerColumnPartition()` `required int64 size_per_column_partition = 7 [default = 10240];`
`boolean`	`hasTreatDeletionsAsIntervals()` `optional bool treat_deletions_as_intervals = 8 [default = true];`
`boolean`	`hasVidMappingFile()` `optional string vid_mapping_file = 5;`
`protected com.google.protobuf.GeneratedMessage.FieldAccessorTable`	`internalGetFieldAccessorTable()`
`boolean`	`isInitialized()`
`private void`	`maybeForceBuilderInitialization()`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`mergeFrom(com.google.protobuf.CodedInputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`mergeFrom(GenomicsDBImportConfiguration.ImportConfiguration other)`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`mergeFrom(com.google.protobuf.Message other)`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`removeColumnPartitions(int index)` `repeated .Partition column_partitions = 4;`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setCallsetMappingFile(String value)` `optional string callset_mapping_file = 6;`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setCallsetMappingFileBytes(com.google.protobuf.ByteString value)` `optional string callset_mapping_file = 6;`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setColumnPartitions(int index, GenomicsDBImportConfiguration.Partition.Builder builderForValue)` `repeated .Partition column_partitions = 4;`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setColumnPartitions(int index, GenomicsDBImportConfiguration.Partition value)` `repeated .Partition column_partitions = 4;`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setCompressTiledbArray(boolean value)` `optional bool compress_tiledb_array = 15 [default = true];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setDeleteAndCreateTiledbArray(boolean value)` `optional bool delete_and_create_tiledb_array = 10 [default = false];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setDiscardVcfIndex(boolean value)` `optional bool discard_vcf_index = 13 [default = true];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setDoPingPongBuffering(boolean value)` `optional bool do_ping_pong_buffering = 11 [default = true];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setNumCellsPerTile(long value)` `optional int64 num_cells_per_tile = 16 [default = 1000];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setNumParallelVcfFiles(int value)` `optional int32 num_parallel_vcf_files = 9 [default = 1];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setOffloadVcfOutputProcessing(boolean value)` `optional bool offload_vcf_output_processing = 12 [default = true];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setProduceCombinedVcf(boolean value)` `optional bool produce_combined_vcf = 2 [default = false];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setProduceTiledbArray(boolean value)` `optional bool produce_tiledb_array = 3 [default = true];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setRowBasedPartitioning(boolean value)` `optional bool row_based_partitioning = 1 [default = false];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setSegmentSize(long value)` `optional int64 segment_size = 14 [default = 10485760];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setSizePerColumnPartition(long value)` `required int64 size_per_column_partition = 7 [default = 10240];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setTreatDeletionsAsIntervals(boolean value)` `optional bool treat_deletions_as_intervals = 8 [default = true];`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setVidMappingFile(String value)` `optional string vid_mapping_file = 5;`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`setVidMappingFileBytes(com.google.protobuf.ByteString value)` `optional string vid_mapping_file = 5;`

Methods inherited from class com.google.protobuf.GeneratedMessage.Builder
addRepeatedField, clearField, clearOneof, clone, getAllFields, getField, getFieldBuilder, getOneofFieldDescriptor, getParentForChildren, getRepeatedField, getRepeatedFieldBuilder, getRepeatedFieldCount, getUnknownFields, hasField, hasOneof, internalGetMapField, internalGetMutableMapField, isClean, markClean, mergeUnknownFields, newBuilderForField, onBuilt, onChanged, parseUnknownField, setField, setRepeatedField, setUnknownFields

Methods inherited from class com.google.protobuf.AbstractMessage.Builder
findInitializationErrors, getInitializationErrorString, mergeDelimitedFrom, mergeDelimitedFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, mergeFrom, newUninitializedMessageException, toString

Methods inherited from class com.google.protobuf.AbstractMessageLite.Builder
addAll, newUninitializedMessageException

Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface com.google.protobuf.MessageOrBuilder
findInitializationErrors, getAllFields, getField, getInitializationErrorString, getOneofFieldDescriptor, getRepeatedField, getRepeatedFieldCount, getUnknownFields, hasField, hasOneof

- Field Detail
  - bitField0_
```
private int bitField0_
```
  - sizePerColumnPartition_
```
private long sizePerColumnPartition_
```
  - rowBasedPartitioning_
```
private boolean rowBasedPartitioning_
```
  - produceCombinedVcf_
```
private boolean produceCombinedVcf_
```
  - produceTiledbArray_
```
private boolean produceTiledbArray_
```
  - columnPartitions_
```
private List<GenomicsDBImportConfiguration.Partition> columnPartitions_
```
  - columnPartitionsBuilder_
```
private com.google.protobuf.RepeatedFieldBuilder<GenomicsDBImportConfiguration.Partition,GenomicsDBImportConfiguration.Partition.Builder,GenomicsDBImportConfiguration.PartitionOrBuilder> columnPartitionsBuilder_
```
  - vidMappingFile_
```
private Object vidMappingFile_
```
  - callsetMappingFile_
```
private Object callsetMappingFile_
```
  - treatDeletionsAsIntervals_
```
private boolean treatDeletionsAsIntervals_
```
  - numParallelVcfFiles_
```
private int numParallelVcfFiles_
```
  - deleteAndCreateTiledbArray_
```
private boolean deleteAndCreateTiledbArray_
```
  - doPingPongBuffering_
```
private boolean doPingPongBuffering_
```
  - offloadVcfOutputProcessing_
```
private boolean offloadVcfOutputProcessing_
```
  - discardVcfIndex_
```
private boolean discardVcfIndex_
```
  - segmentSize_
```
private long segmentSize_
```
  - compressTiledbArray_
```
private boolean compressTiledbArray_
```
  - numCellsPerTile_
```
private long numCellsPerTile_
```
- Constructor Detail
  - Builder
```
private Builder()
```
  - Builder
```
private Builder(com.google.protobuf.GeneratedMessage.BuilderParent parent)
```
- Method Detail
  - getDescriptor
```
public static final com.google.protobuf.Descriptors.Descriptor getDescriptor()
```
  - internalGetFieldAccessorTable
```
protected com.google.protobuf.GeneratedMessage.FieldAccessorTable internalGetFieldAccessorTable()
```
    Specified by:
    
    internalGetFieldAccessorTable in class com.google.protobuf.GeneratedMessage.Builder<GenomicsDBImportConfiguration.ImportConfiguration.Builder>
  - maybeForceBuilderInitialization
```
private void maybeForceBuilderInitialization()
```
  - clear
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder clear()
```
    Specified by:
    
    clear in interface com.google.protobuf.Message.Builder
    
    Specified by:
    
    clear in interface com.google.protobuf.MessageLite.Builder
    
    Overrides:
    
    clear in class com.google.protobuf.GeneratedMessage.Builder<GenomicsDBImportConfiguration.ImportConfiguration.Builder>
  - getDescriptorForType
```
public com.google.protobuf.Descriptors.Descriptor getDescriptorForType()
```
    Specified by:
    
    getDescriptorForType in interface com.google.protobuf.Message.Builder
    
    Specified by:
    
    getDescriptorForType in interface com.google.protobuf.MessageOrBuilder
    
    Overrides:
    
    getDescriptorForType in class com.google.protobuf.GeneratedMessage.Builder<GenomicsDBImportConfiguration.ImportConfiguration.Builder>
  - getDefaultInstanceForType
```
public GenomicsDBImportConfiguration.ImportConfiguration getDefaultInstanceForType()
```
    Specified by:
    
    getDefaultInstanceForType in interface com.google.protobuf.MessageLiteOrBuilder
    
    Specified by:
    
    getDefaultInstanceForType in interface com.google.protobuf.MessageOrBuilder
  - build
```
public GenomicsDBImportConfiguration.ImportConfiguration build()
```
    Specified by:
    
    build in interface com.google.protobuf.Message.Builder
    
    Specified by:
    
    build in interface com.google.protobuf.MessageLite.Builder
  - buildPartial
```
public GenomicsDBImportConfiguration.ImportConfiguration buildPartial()
```
    Specified by:
    
    buildPartial in interface com.google.protobuf.Message.Builder
    
    Specified by:
    
    buildPartial in interface com.google.protobuf.MessageLite.Builder
  - mergeFrom
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder mergeFrom(com.google.protobuf.Message other)
```
    Specified by:
    
    mergeFrom in interface com.google.protobuf.Message.Builder
    
    Overrides:
    
    mergeFrom in class com.google.protobuf.AbstractMessage.Builder<GenomicsDBImportConfiguration.ImportConfiguration.Builder>
  - mergeFrom
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder mergeFrom(GenomicsDBImportConfiguration.ImportConfiguration other)
```
  - isInitialized
```
public final boolean isInitialized()
```
    Specified by:
    
    isInitialized in interface com.google.protobuf.MessageLiteOrBuilder
    
    Overrides:
    
    isInitialized in class com.google.protobuf.GeneratedMessage.Builder<GenomicsDBImportConfiguration.ImportConfiguration.Builder>
  - mergeFrom
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder mergeFrom(com.google.protobuf.CodedInputStream input,
                                                                           com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                                                    throws IOException
```
    Specified by:
    
    mergeFrom in interface com.google.protobuf.Message.Builder
    
    Specified by:
    
    mergeFrom in interface com.google.protobuf.MessageLite.Builder
    
    Overrides:
    
    mergeFrom in class com.google.protobuf.AbstractMessage.Builder<GenomicsDBImportConfiguration.ImportConfiguration.Builder>
    
    Throws:
    
    IOException
  - hasSizePerColumnPartition
```
public boolean hasSizePerColumnPartition()
```
    required int64 size_per_column_partition = 7 [default = 10240];
    
    Specified by:
    
    hasSizePerColumnPartition in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getSizePerColumnPartition
```
public long getSizePerColumnPartition()
```
    required int64 size_per_column_partition = 7 [default = 10240];
    
    Specified by:
    
    getSizePerColumnPartition in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - setSizePerColumnPartition
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setSizePerColumnPartition(long value)
```
    required int64 size_per_column_partition = 7 [default = 10240];
  - clearSizePerColumnPartition
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder clearSizePerColumnPartition()
```
    required int64 size_per_column_partition = 7 [default = 10240];
  - hasRowBasedPartitioning
```
public boolean hasRowBasedPartitioning()
```
    optional bool row_based_partitioning = 1 [default = false];
    
    Specified by:
    
    hasRowBasedPartitioning in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getRowBasedPartitioning
```
public boolean getRowBasedPartitioning()
```
    optional bool row_based_partitioning = 1 [default = false];
    
    Specified by:
    
    getRowBasedPartitioning in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - setRowBasedPartitioning
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setRowBasedPartitioning(boolean value)
```
    optional bool row_based_partitioning = 1 [default = false];
  - clearRowBasedPartitioning
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder clearRowBasedPartitioning()
```
    optional bool row_based_partitioning = 1 [default = false];
  - hasProduceCombinedVcf
```
public boolean hasProduceCombinedVcf()
```
    optional bool produce_combined_vcf = 2 [default = false];
    
    Specified by:
    
    hasProduceCombinedVcf in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getProduceCombinedVcf
```
public boolean getProduceCombinedVcf()
```
    optional bool produce_combined_vcf = 2 [default = false];
    
    Specified by:
    
    getProduceCombinedVcf in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - setProduceCombinedVcf
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setProduceCombinedVcf(boolean value)
```
    optional bool produce_combined_vcf = 2 [default = false];
  - clearProduceCombinedVcf
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder clearProduceCombinedVcf()
```
    optional bool produce_combined_vcf = 2 [default = false];
  - hasProduceTiledbArray
```
public boolean hasProduceTiledbArray()
```
    optional bool produce_tiledb_array = 3 [default = true];
    
    Specified by:
    
    hasProduceTiledbArray in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getProduceTiledbArray
```
public boolean getProduceTiledbArray()
```
    optional bool produce_tiledb_array = 3 [default = true];
    
    Specified by:
    
    getProduceTiledbArray in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - setProduceTiledbArray
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setProduceTiledbArray(boolean value)
```
    optional bool produce_tiledb_array = 3 [default = true];
  - clearProduceTiledbArray
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder clearProduceTiledbArray()
```
    optional bool produce_tiledb_array = 3 [default = true];
  - ensureColumnPartitionsIsMutable
```
private void ensureColumnPartitionsIsMutable()
```
  - getColumnPartitionsList
```
public List<GenomicsDBImportConfiguration.Partition> getColumnPartitionsList()
```
    repeated .Partition column_partitions = 4;
    
    Specified by:
    
    getColumnPartitionsList in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getColumnPartitionsCount
```
public int getColumnPartitionsCount()
```
    repeated .Partition column_partitions = 4;
    
    Specified by:
    
    getColumnPartitionsCount in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getColumnPartitions
```
public GenomicsDBImportConfiguration.Partition getColumnPartitions(int index)
```
    repeated .Partition column_partitions = 4;
    
    Specified by:
    
    getColumnPartitions in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - setColumnPartitions
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setColumnPartitions(int index,
                                                                                     GenomicsDBImportConfiguration.Partition value)
```
    repeated .Partition column_partitions = 4;
  - setColumnPartitions
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setColumnPartitions(int index,
                                                                                     GenomicsDBImportConfiguration.Partition.Builder builderForValue)
```
    repeated .Partition column_partitions = 4;
  - addColumnPartitions
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder addColumnPartitions(GenomicsDBImportConfiguration.Partition value)
```
    repeated .Partition column_partitions = 4;
  - addColumnPartitions
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder addColumnPartitions(int index,
                                                                                     GenomicsDBImportConfiguration.Partition value)
```
    repeated .Partition column_partitions = 4;
  - addColumnPartitions
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder addColumnPartitions(GenomicsDBImportConfiguration.Partition.Builder builderForValue)
```
    repeated .Partition column_partitions = 4;
  - addColumnPartitions
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder addColumnPartitions(int index,
                                                                                     GenomicsDBImportConfiguration.Partition.Builder builderForValue)
```
    repeated .Partition column_partitions = 4;
  - addAllColumnPartitions
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder addAllColumnPartitions(Iterable<? extends GenomicsDBImportConfiguration.Partition> values)
```
    repeated .Partition column_partitions = 4;
  - clearColumnPartitions
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder clearColumnPartitions()
```
    repeated .Partition column_partitions = 4;
  - removeColumnPartitions
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder removeColumnPartitions(int index)
```
    repeated .Partition column_partitions = 4;
  - getColumnPartitionsBuilder
```
public GenomicsDBImportConfiguration.Partition.Builder getColumnPartitionsBuilder(int index)
```
    repeated .Partition column_partitions = 4;
  - getColumnPartitionsOrBuilder
```
public GenomicsDBImportConfiguration.PartitionOrBuilder getColumnPartitionsOrBuilder(int index)
```
    repeated .Partition column_partitions = 4;
    
    Specified by:
    
    getColumnPartitionsOrBuilder in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getColumnPartitionsOrBuilderList
```
public List<? extends GenomicsDBImportConfiguration.PartitionOrBuilder> getColumnPartitionsOrBuilderList()
```
    repeated .Partition column_partitions = 4;
    
    Specified by:
    
    getColumnPartitionsOrBuilderList in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - addColumnPartitionsBuilder
```
public GenomicsDBImportConfiguration.Partition.Builder addColumnPartitionsBuilder()
```
    repeated .Partition column_partitions = 4;
  - addColumnPartitionsBuilder
```
public GenomicsDBImportConfiguration.Partition.Builder addColumnPartitionsBuilder(int index)
```
    repeated .Partition column_partitions = 4;
  - getColumnPartitionsBuilderList
```
public List<GenomicsDBImportConfiguration.Partition.Builder> getColumnPartitionsBuilderList()
```
    repeated .Partition column_partitions = 4;
  - getColumnPartitionsFieldBuilder
```
private com.google.protobuf.RepeatedFieldBuilder<GenomicsDBImportConfiguration.Partition,GenomicsDBImportConfiguration.Partition.Builder,GenomicsDBImportConfiguration.PartitionOrBuilder> getColumnPartitionsFieldBuilder()
```
  - hasVidMappingFile
```
public boolean hasVidMappingFile()
```
    optional string vid_mapping_file = 5;
    
    Specified by:
    
    hasVidMappingFile in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getVidMappingFile
```
public String getVidMappingFile()
```
    optional string vid_mapping_file = 5;
    
    Specified by:
    
    getVidMappingFile in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getVidMappingFileBytes
```
public com.google.protobuf.ByteString getVidMappingFileBytes()
```
    optional string vid_mapping_file = 5;
    
    Specified by:
    
    getVidMappingFileBytes in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - setVidMappingFile
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setVidMappingFile(String value)
```
    optional string vid_mapping_file = 5;
  - clearVidMappingFile
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder clearVidMappingFile()
```
    optional string vid_mapping_file = 5;
  - setVidMappingFileBytes
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setVidMappingFileBytes(com.google.protobuf.ByteString value)
```
    optional string vid_mapping_file = 5;
  - hasCallsetMappingFile
```
public boolean hasCallsetMappingFile()
```
    optional string callset_mapping_file = 6;
    
    Specified by:
    
    hasCallsetMappingFile in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getCallsetMappingFile
```
public String getCallsetMappingFile()
```
    optional string callset_mapping_file = 6;
    
    Specified by:
    
    getCallsetMappingFile in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getCallsetMappingFileBytes
```
public com.google.protobuf.ByteString getCallsetMappingFileBytes()
```
    optional string callset_mapping_file = 6;
    
    Specified by:
    
    getCallsetMappingFileBytes in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - setCallsetMappingFile
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setCallsetMappingFile(String value)
```
    optional string callset_mapping_file = 6;
  - clearCallsetMappingFile
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder clearCallsetMappingFile()
```
    optional string callset_mapping_file = 6;
  - setCallsetMappingFileBytes
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setCallsetMappingFileBytes(com.google.protobuf.ByteString value)
```
    optional string callset_mapping_file = 6;
  - hasTreatDeletionsAsIntervals
```
public boolean hasTreatDeletionsAsIntervals()
```
    optional bool treat_deletions_as_intervals = 8 [default = true];
    
    Specified by:
    
    hasTreatDeletionsAsIntervals in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getTreatDeletionsAsIntervals
```
public boolean getTreatDeletionsAsIntervals()
```
    optional bool treat_deletions_as_intervals = 8 [default = true];
    
    Specified by:
    
    getTreatDeletionsAsIntervals in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - setTreatDeletionsAsIntervals
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setTreatDeletionsAsIntervals(boolean value)
```
    optional bool treat_deletions_as_intervals = 8 [default = true];
  - clearTreatDeletionsAsIntervals
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder clearTreatDeletionsAsIntervals()
```
    optional bool treat_deletions_as_intervals = 8 [default = true];
  - hasNumParallelVcfFiles
```
public boolean hasNumParallelVcfFiles()
```
    optional int32 num_parallel_vcf_files = 9 [default = 1];
    
    Specified by:
    
    hasNumParallelVcfFiles in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getNumParallelVcfFiles
```
public int getNumParallelVcfFiles()
```
    optional int32 num_parallel_vcf_files = 9 [default = 1];
    
    Specified by:
    
    getNumParallelVcfFiles in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - setNumParallelVcfFiles
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setNumParallelVcfFiles(int value)
```
    optional int32 num_parallel_vcf_files = 9 [default = 1];
  - clearNumParallelVcfFiles
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder clearNumParallelVcfFiles()
```
    optional int32 num_parallel_vcf_files = 9 [default = 1];
  - hasDeleteAndCreateTiledbArray
```
public boolean hasDeleteAndCreateTiledbArray()
```
    optional bool delete_and_create_tiledb_array = 10 [default = false];
    
    Specified by:
    
    hasDeleteAndCreateTiledbArray in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getDeleteAndCreateTiledbArray
```
public boolean getDeleteAndCreateTiledbArray()
```
    optional bool delete_and_create_tiledb_array = 10 [default = false];
    
    Specified by:
    
    getDeleteAndCreateTiledbArray in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - setDeleteAndCreateTiledbArray
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setDeleteAndCreateTiledbArray(boolean value)
```
    optional bool delete_and_create_tiledb_array = 10 [default = false];
  - clearDeleteAndCreateTiledbArray
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder clearDeleteAndCreateTiledbArray()
```
    optional bool delete_and_create_tiledb_array = 10 [default = false];
  - hasDoPingPongBuffering
```
public boolean hasDoPingPongBuffering()
```
    optional bool do_ping_pong_buffering = 11 [default = true];
    
    Specified by:
    
    hasDoPingPongBuffering in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getDoPingPongBuffering
```
public boolean getDoPingPongBuffering()
```
    optional bool do_ping_pong_buffering = 11 [default = true];
    
    Specified by:
    
    getDoPingPongBuffering in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - setDoPingPongBuffering
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setDoPingPongBuffering(boolean value)
```
    optional bool do_ping_pong_buffering = 11 [default = true];
  - clearDoPingPongBuffering
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder clearDoPingPongBuffering()
```
    optional bool do_ping_pong_buffering = 11 [default = true];
  - hasOffloadVcfOutputProcessing
```
public boolean hasOffloadVcfOutputProcessing()
```
    optional bool offload_vcf_output_processing = 12 [default = true];
    
    Specified by:
    
    hasOffloadVcfOutputProcessing in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getOffloadVcfOutputProcessing
```
public boolean getOffloadVcfOutputProcessing()
```
    optional bool offload_vcf_output_processing = 12 [default = true];
    
    Specified by:
    
    getOffloadVcfOutputProcessing in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - setOffloadVcfOutputProcessing
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setOffloadVcfOutputProcessing(boolean value)
```
    optional bool offload_vcf_output_processing = 12 [default = true];
  - clearOffloadVcfOutputProcessing
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder clearOffloadVcfOutputProcessing()
```
    optional bool offload_vcf_output_processing = 12 [default = true];
  - hasDiscardVcfIndex
```
public boolean hasDiscardVcfIndex()
```
    optional bool discard_vcf_index = 13 [default = true];
    
    Specified by:
    
    hasDiscardVcfIndex in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getDiscardVcfIndex
```
public boolean getDiscardVcfIndex()
```
    optional bool discard_vcf_index = 13 [default = true];
    
    Specified by:
    
    getDiscardVcfIndex in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - setDiscardVcfIndex
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setDiscardVcfIndex(boolean value)
```
    optional bool discard_vcf_index = 13 [default = true];
  - clearDiscardVcfIndex
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder clearDiscardVcfIndex()
```
    optional bool discard_vcf_index = 13 [default = true];
  - hasSegmentSize
```
public boolean hasSegmentSize()
```
    optional int64 segment_size = 14 [default = 10485760];
    
    Specified by:
    
    hasSegmentSize in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getSegmentSize
```
public long getSegmentSize()
```
    optional int64 segment_size = 14 [default = 10485760];
    
    Specified by:
    
    getSegmentSize in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - setSegmentSize
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setSegmentSize(long value)
```
    optional int64 segment_size = 14 [default = 10485760];
  - clearSegmentSize
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder clearSegmentSize()
```
    optional int64 segment_size = 14 [default = 10485760];
  - hasCompressTiledbArray
```
public boolean hasCompressTiledbArray()
```
    optional bool compress_tiledb_array = 15 [default = true];
    
    Specified by:
    
    hasCompressTiledbArray in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getCompressTiledbArray
```
public boolean getCompressTiledbArray()
```
    optional bool compress_tiledb_array = 15 [default = true];
    
    Specified by:
    
    getCompressTiledbArray in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - setCompressTiledbArray
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setCompressTiledbArray(boolean value)
```
    optional bool compress_tiledb_array = 15 [default = true];
  - clearCompressTiledbArray
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder clearCompressTiledbArray()
```
    optional bool compress_tiledb_array = 15 [default = true];
  - hasNumCellsPerTile
```
public boolean hasNumCellsPerTile()
```
    optional int64 num_cells_per_tile = 16 [default = 1000];
    
    Specified by:
    
    hasNumCellsPerTile in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getNumCellsPerTile
```
public long getNumCellsPerTile()
```
    optional int64 num_cells_per_tile = 16 [default = 1000];
    
    Specified by:
    
    getNumCellsPerTile in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - setNumCellsPerTile
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder setNumCellsPerTile(long value)
```
    optional int64 num_cells_per_tile = 16 [default = 1000];
  - clearNumCellsPerTile
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder clearNumCellsPerTile()
```
    optional int64 num_cells_per_tile = 16 [default = 1000];

Class GenomicsDBImportConfiguration.ImportConfiguration.Builder

Field Summary

Constructor Summary

Method Summary

Methods inherited from class com.google.protobuf.GeneratedMessage.Builder

Methods inherited from class com.google.protobuf.AbstractMessage.Builder

Methods inherited from class com.google.protobuf.AbstractMessageLite.Builder

Methods inherited from class java.lang.Object

Methods inherited from interface com.google.protobuf.MessageOrBuilder

Field Detail

bitField0_

sizePerColumnPartition_

rowBasedPartitioning_

produceCombinedVcf_

produceTiledbArray_

columnPartitions_

columnPartitionsBuilder_

vidMappingFile_

callsetMappingFile_

treatDeletionsAsIntervals_

numParallelVcfFiles_

deleteAndCreateTiledbArray_

doPingPongBuffering_

offloadVcfOutputProcessing_

discardVcfIndex_

segmentSize_

compressTiledbArray_

numCellsPerTile_

Constructor Detail

Builder

Builder

Method Detail

getDescriptor

internalGetFieldAccessorTable

maybeForceBuilderInitialization

clear

getDescriptorForType

getDefaultInstanceForType

build

buildPartial

mergeFrom

mergeFrom

isInitialized

mergeFrom

hasSizePerColumnPartition

getSizePerColumnPartition

setSizePerColumnPartition

clearSizePerColumnPartition

hasRowBasedPartitioning

getRowBasedPartitioning

setRowBasedPartitioning

clearRowBasedPartitioning

hasProduceCombinedVcf

getProduceCombinedVcf

setProduceCombinedVcf

clearProduceCombinedVcf

hasProduceTiledbArray

getProduceTiledbArray

setProduceTiledbArray

clearProduceTiledbArray

ensureColumnPartitionsIsMutable

getColumnPartitionsList

getColumnPartitionsCount

getColumnPartitions

setColumnPartitions

setColumnPartitions

addColumnPartitions

addColumnPartitions

addColumnPartitions

addColumnPartitions

addAllColumnPartitions

clearColumnPartitions

removeColumnPartitions

getColumnPartitionsBuilder

getColumnPartitionsOrBuilder

getColumnPartitionsOrBuilderList

addColumnPartitionsBuilder

addColumnPartitionsBuilder

getColumnPartitionsBuilderList

getColumnPartitionsFieldBuilder