GenomicsDBImportConfiguration.ImportConfiguration (com.intel:genomicsdb-gatk4 0.4.0 API)

java.lang.Object
- com.google.protobuf.AbstractMessageLite
- - com.google.protobuf.AbstractMessage
  - - com.google.protobuf.GeneratedMessage
    - - com.intel.genomicsdb.GenomicsDBImportConfiguration.ImportConfiguration

All Implemented Interfaces:

com.google.protobuf.Message, com.google.protobuf.MessageLite, com.google.protobuf.MessageLiteOrBuilder, com.google.protobuf.MessageOrBuilder, GenomicsDBImportConfiguration.ImportConfigurationOrBuilder, Serializable

Enclosing class:

GenomicsDBImportConfiguration
```
public static final class GenomicsDBImportConfiguration.ImportConfiguration
extends com.google.protobuf.GeneratedMessage
implements GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
```
Protobuf type ImportConfiguration

See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static class GenomicsDBImportConfiguration.ImportConfiguration.Builder
Protobuf type ImportConfiguration
- Nested classes/interfaces inherited from class com.google.protobuf.GeneratedMessage
  com.google.protobuf.GeneratedMessage.BuilderParent, com.google.protobuf.GeneratedMessage.ExtendableBuilder<MessageType extends com.google.protobuf.GeneratedMessage.ExtendableMessage,BuilderType extends com.google.protobuf.GeneratedMessage.ExtendableBuilder>, com.google.protobuf.GeneratedMessage.ExtendableMessage<MessageType extends com.google.protobuf.GeneratedMessage.ExtendableMessage>, com.google.protobuf.GeneratedMessage.ExtendableMessageOrBuilder<MessageType extends com.google.protobuf.GeneratedMessage.ExtendableMessage>, com.google.protobuf.GeneratedMessage.FieldAccessorTable, com.google.protobuf.GeneratedMessage.GeneratedExtension<ContainingType extends com.google.protobuf.Message,Type>

Nested Classes
Modifier and Type	Class and Description
`static class`	`GenomicsDBImportConfiguration.ImportConfiguration.Builder` Protobuf type `ImportConfiguration`

Field Summary

Fields
Modifier and Type	Field and Description
`private int`	`bitField0_`
`static int`	`CALLSET_MAPPING_FILE_FIELD_NUMBER`
`private Object`	`callsetMappingFile_`
`static int`	`COLUMN_PARTITIONS_FIELD_NUMBER`
`private List<GenomicsDBImportConfiguration.Partition>`	`columnPartitions_`
`static int`	`COMPRESS_TILEDB_ARRAY_FIELD_NUMBER`
`private boolean`	`compressTiledbArray_`
`private static GenomicsDBImportConfiguration.ImportConfiguration`	`DEFAULT_INSTANCE`
`static int`	`DELETE_AND_CREATE_TILEDB_ARRAY_FIELD_NUMBER`
`private boolean`	`deleteAndCreateTiledbArray_`
`static int`	`DISCARD_VCF_INDEX_FIELD_NUMBER`
`private boolean`	`discardVcfIndex_`
`static int`	`DO_PING_PONG_BUFFERING_FIELD_NUMBER`
`private boolean`	`doPingPongBuffering_`
`private byte`	`memoizedIsInitialized`
`static int`	`NUM_CELLS_PER_TILE_FIELD_NUMBER`
`static int`	`NUM_PARALLEL_VCF_FILES_FIELD_NUMBER`
`private long`	`numCellsPerTile_`
`private int`	`numParallelVcfFiles_`
`static int`	`OFFLOAD_VCF_OUTPUT_PROCESSING_FIELD_NUMBER`
`private boolean`	`offloadVcfOutputProcessing_`
`static com.google.protobuf.Parser<GenomicsDBImportConfiguration.ImportConfiguration>`	`PARSER` Deprecated.
`static int`	`PRODUCE_COMBINED_VCF_FIELD_NUMBER`
`static int`	`PRODUCE_TILEDB_ARRAY_FIELD_NUMBER`
`private boolean`	`produceCombinedVcf_`
`private boolean`	`produceTiledbArray_`
`static int`	`ROW_BASED_PARTITIONING_FIELD_NUMBER`
`private boolean`	`rowBasedPartitioning_`
`static int`	`SEGMENT_SIZE_FIELD_NUMBER`
`private long`	`segmentSize_`
`private static long`	`serialVersionUID`
`static int`	`SIZE_PER_COLUMN_PARTITION_FIELD_NUMBER`
`private long`	`sizePerColumnPartition_`
`static int`	`TREAT_DELETIONS_AS_INTERVALS_FIELD_NUMBER`
`private boolean`	`treatDeletionsAsIntervals_`
`static int`	`VID_MAPPING_FILE_FIELD_NUMBER`
`private Object`	`vidMappingFile_`

Fields inherited from class com.google.protobuf.GeneratedMessage
alwaysUseFieldBuilders, unknownFields

Fields inherited from class com.google.protobuf.AbstractMessage
memoizedSize

Fields inherited from class com.google.protobuf.AbstractMessageLite
memoizedHashCode

Constructor Summary

Constructors
Modifier	Constructor and Description
`private`	`ImportConfiguration()`
`private`	`ImportConfiguration(com.google.protobuf.CodedInputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)`
`private`	`ImportConfiguration(com.google.protobuf.GeneratedMessage.Builder<?> builder)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`String`	`getCallsetMappingFile()` `optional string callset_mapping_file = 6;`
`com.google.protobuf.ByteString`	`getCallsetMappingFileBytes()` `optional string callset_mapping_file = 6;`
`GenomicsDBImportConfiguration.Partition`	`getColumnPartitions(int index)` `repeated .Partition column_partitions = 4;`
`int`	`getColumnPartitionsCount()` `repeated .Partition column_partitions = 4;`
`List<GenomicsDBImportConfiguration.Partition>`	`getColumnPartitionsList()` `repeated .Partition column_partitions = 4;`
`GenomicsDBImportConfiguration.PartitionOrBuilder`	`getColumnPartitionsOrBuilder(int index)` `repeated .Partition column_partitions = 4;`
`List<? extends GenomicsDBImportConfiguration.PartitionOrBuilder>`	`getColumnPartitionsOrBuilderList()` `repeated .Partition column_partitions = 4;`
`boolean`	`getCompressTiledbArray()` `optional bool compress_tiledb_array = 15 [default = true];`
`static GenomicsDBImportConfiguration.ImportConfiguration`	`getDefaultInstance()`
`GenomicsDBImportConfiguration.ImportConfiguration`	`getDefaultInstanceForType()`
`boolean`	`getDeleteAndCreateTiledbArray()` `optional bool delete_and_create_tiledb_array = 10 [default = false];`
`static com.google.protobuf.Descriptors.Descriptor`	`getDescriptor()`
`boolean`	`getDiscardVcfIndex()` `optional bool discard_vcf_index = 13 [default = true];`
`boolean`	`getDoPingPongBuffering()` `optional bool do_ping_pong_buffering = 11 [default = true];`
`long`	`getNumCellsPerTile()` `optional int64 num_cells_per_tile = 16 [default = 1000];`
`int`	`getNumParallelVcfFiles()` `optional int32 num_parallel_vcf_files = 9 [default = 1];`
`boolean`	`getOffloadVcfOutputProcessing()` `optional bool offload_vcf_output_processing = 12 [default = true];`
`com.google.protobuf.Parser<GenomicsDBImportConfiguration.ImportConfiguration>`	`getParserForType()`
`boolean`	`getProduceCombinedVcf()` `optional bool produce_combined_vcf = 2 [default = false];`
`boolean`	`getProduceTiledbArray()` `optional bool produce_tiledb_array = 3 [default = true];`
`boolean`	`getRowBasedPartitioning()` `optional bool row_based_partitioning = 1 [default = false];`
`long`	`getSegmentSize()` `optional int64 segment_size = 14 [default = 10485760];`
`int`	`getSerializedSize()`
`long`	`getSizePerColumnPartition()` `required int64 size_per_column_partition = 7 [default = 10240];`
`boolean`	`getTreatDeletionsAsIntervals()` `optional bool treat_deletions_as_intervals = 8 [default = true];`
`com.google.protobuf.UnknownFieldSet`	`getUnknownFields()`
`String`	`getVidMappingFile()` `optional string vid_mapping_file = 5;`
`com.google.protobuf.ByteString`	`getVidMappingFileBytes()` `optional string vid_mapping_file = 5;`
`boolean`	`hasCallsetMappingFile()` `optional string callset_mapping_file = 6;`
`boolean`	`hasCompressTiledbArray()` `optional bool compress_tiledb_array = 15 [default = true];`
`boolean`	`hasDeleteAndCreateTiledbArray()` `optional bool delete_and_create_tiledb_array = 10 [default = false];`
`boolean`	`hasDiscardVcfIndex()` `optional bool discard_vcf_index = 13 [default = true];`
`boolean`	`hasDoPingPongBuffering()` `optional bool do_ping_pong_buffering = 11 [default = true];`
`boolean`	`hasNumCellsPerTile()` `optional int64 num_cells_per_tile = 16 [default = 1000];`
`boolean`	`hasNumParallelVcfFiles()` `optional int32 num_parallel_vcf_files = 9 [default = 1];`
`boolean`	`hasOffloadVcfOutputProcessing()` `optional bool offload_vcf_output_processing = 12 [default = true];`
`boolean`	`hasProduceCombinedVcf()` `optional bool produce_combined_vcf = 2 [default = false];`
`boolean`	`hasProduceTiledbArray()` `optional bool produce_tiledb_array = 3 [default = true];`
`boolean`	`hasRowBasedPartitioning()` `optional bool row_based_partitioning = 1 [default = false];`
`boolean`	`hasSegmentSize()` `optional int64 segment_size = 14 [default = 10485760];`
`boolean`	`hasSizePerColumnPartition()` `required int64 size_per_column_partition = 7 [default = 10240];`
`boolean`	`hasTreatDeletionsAsIntervals()` `optional bool treat_deletions_as_intervals = 8 [default = true];`
`boolean`	`hasVidMappingFile()` `optional string vid_mapping_file = 5;`
`protected com.google.protobuf.GeneratedMessage.FieldAccessorTable`	`internalGetFieldAccessorTable()`
`boolean`	`isInitialized()`
`static GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`newBuilder()`
`static GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`newBuilder(GenomicsDBImportConfiguration.ImportConfiguration prototype)`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`newBuilderForType()`
`protected GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`newBuilderForType(com.google.protobuf.GeneratedMessage.BuilderParent parent)`
`static GenomicsDBImportConfiguration.ImportConfiguration`	`parseDelimitedFrom(InputStream input)`
`static GenomicsDBImportConfiguration.ImportConfiguration`	`parseDelimitedFrom(InputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)`
`static GenomicsDBImportConfiguration.ImportConfiguration`	`parseFrom(byte[] data)`
`static GenomicsDBImportConfiguration.ImportConfiguration`	`parseFrom(byte[] data, com.google.protobuf.ExtensionRegistryLite extensionRegistry)`
`static GenomicsDBImportConfiguration.ImportConfiguration`	`parseFrom(com.google.protobuf.ByteString data)`
`static GenomicsDBImportConfiguration.ImportConfiguration`	`parseFrom(com.google.protobuf.ByteString data, com.google.protobuf.ExtensionRegistryLite extensionRegistry)`
`static GenomicsDBImportConfiguration.ImportConfiguration`	`parseFrom(com.google.protobuf.CodedInputStream input)`
`static GenomicsDBImportConfiguration.ImportConfiguration`	`parseFrom(com.google.protobuf.CodedInputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)`
`static GenomicsDBImportConfiguration.ImportConfiguration`	`parseFrom(InputStream input)`
`static GenomicsDBImportConfiguration.ImportConfiguration`	`parseFrom(InputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)`
`static com.google.protobuf.Parser<GenomicsDBImportConfiguration.ImportConfiguration>`	`parser()`
`GenomicsDBImportConfiguration.ImportConfiguration.Builder`	`toBuilder()`
`void`	`writeTo(com.google.protobuf.CodedOutputStream output)`

Methods inherited from class com.google.protobuf.GeneratedMessage
computeStringSize, computeStringSizeNoTag, getAllFields, getDescriptorForType, getField, getOneofFieldDescriptor, getRepeatedField, getRepeatedFieldCount, hasField, hasOneof, internalGetMapField, makeExtensionsImmutable, newFileScopedGeneratedExtension, newFileScopedGeneratedExtension, newMessageScopedGeneratedExtension, newMessageScopedGeneratedExtension, parseUnknownField, writeReplace, writeString, writeStringNoTag

Methods inherited from class com.google.protobuf.AbstractMessage
equals, findInitializationErrors, getInitializationErrorString, hashCode, hashFields, toString

Methods inherited from class com.google.protobuf.AbstractMessageLite
addAll, checkByteStringIsUtf8, toByteArray, toByteString, writeDelimitedTo, writeTo

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface com.google.protobuf.MessageOrBuilder
findInitializationErrors, getAllFields, getDescriptorForType, getField, getInitializationErrorString, getOneofFieldDescriptor, getRepeatedField, getRepeatedFieldCount, hasField, hasOneof

Methods inherited from interface com.google.protobuf.MessageLite
toByteArray, toByteString, writeDelimitedTo, writeTo

- Field Detail
  - bitField0_
```
private int bitField0_
```
  - SIZE_PER_COLUMN_PARTITION_FIELD_NUMBER
```
public static final int SIZE_PER_COLUMN_PARTITION_FIELD_NUMBER
```
    See Also:
    
    Constant Field Values
  - sizePerColumnPartition_
```
private long sizePerColumnPartition_
```
  - ROW_BASED_PARTITIONING_FIELD_NUMBER
```
public static final int ROW_BASED_PARTITIONING_FIELD_NUMBER
```
    See Also:
    
    Constant Field Values
  - rowBasedPartitioning_
```
private boolean rowBasedPartitioning_
```
  - PRODUCE_COMBINED_VCF_FIELD_NUMBER
```
public static final int PRODUCE_COMBINED_VCF_FIELD_NUMBER
```
    See Also:
    
    Constant Field Values
  - produceCombinedVcf_
```
private boolean produceCombinedVcf_
```
  - PRODUCE_TILEDB_ARRAY_FIELD_NUMBER
```
public static final int PRODUCE_TILEDB_ARRAY_FIELD_NUMBER
```
    See Also:
    
    Constant Field Values
  - produceTiledbArray_
```
private boolean produceTiledbArray_
```
  - COLUMN_PARTITIONS_FIELD_NUMBER
```
public static final int COLUMN_PARTITIONS_FIELD_NUMBER
```
    See Also:
    
    Constant Field Values
  - columnPartitions_
```
private List<GenomicsDBImportConfiguration.Partition> columnPartitions_
```
  - VID_MAPPING_FILE_FIELD_NUMBER
```
public static final int VID_MAPPING_FILE_FIELD_NUMBER
```
    See Also:
    
    Constant Field Values
  - vidMappingFile_
```
private volatile Object vidMappingFile_
```
  - CALLSET_MAPPING_FILE_FIELD_NUMBER
```
public static final int CALLSET_MAPPING_FILE_FIELD_NUMBER
```
    See Also:
    
    Constant Field Values
  - callsetMappingFile_
```
private volatile Object callsetMappingFile_
```
  - TREAT_DELETIONS_AS_INTERVALS_FIELD_NUMBER
```
public static final int TREAT_DELETIONS_AS_INTERVALS_FIELD_NUMBER
```
    See Also:
    
    Constant Field Values
  - treatDeletionsAsIntervals_
```
private boolean treatDeletionsAsIntervals_
```
  - NUM_PARALLEL_VCF_FILES_FIELD_NUMBER
```
public static final int NUM_PARALLEL_VCF_FILES_FIELD_NUMBER
```
    See Also:
    
    Constant Field Values
  - numParallelVcfFiles_
```
private int numParallelVcfFiles_
```
  - DELETE_AND_CREATE_TILEDB_ARRAY_FIELD_NUMBER
```
public static final int DELETE_AND_CREATE_TILEDB_ARRAY_FIELD_NUMBER
```
    See Also:
    
    Constant Field Values
  - deleteAndCreateTiledbArray_
```
private boolean deleteAndCreateTiledbArray_
```
  - DO_PING_PONG_BUFFERING_FIELD_NUMBER
```
public static final int DO_PING_PONG_BUFFERING_FIELD_NUMBER
```
    See Also:
    
    Constant Field Values
  - doPingPongBuffering_
```
private boolean doPingPongBuffering_
```
  - OFFLOAD_VCF_OUTPUT_PROCESSING_FIELD_NUMBER
```
public static final int OFFLOAD_VCF_OUTPUT_PROCESSING_FIELD_NUMBER
```
    See Also:
    
    Constant Field Values
  - offloadVcfOutputProcessing_
```
private boolean offloadVcfOutputProcessing_
```
  - DISCARD_VCF_INDEX_FIELD_NUMBER
```
public static final int DISCARD_VCF_INDEX_FIELD_NUMBER
```
    See Also:
    
    Constant Field Values
  - discardVcfIndex_
```
private boolean discardVcfIndex_
```
  - SEGMENT_SIZE_FIELD_NUMBER
```
public static final int SEGMENT_SIZE_FIELD_NUMBER
```
    See Also:
    
    Constant Field Values
  - segmentSize_
```
private long segmentSize_
```
  - COMPRESS_TILEDB_ARRAY_FIELD_NUMBER
```
public static final int COMPRESS_TILEDB_ARRAY_FIELD_NUMBER
```
    See Also:
    
    Constant Field Values
  - compressTiledbArray_
```
private boolean compressTiledbArray_
```
  - NUM_CELLS_PER_TILE_FIELD_NUMBER
```
public static final int NUM_CELLS_PER_TILE_FIELD_NUMBER
```
    See Also:
    
    Constant Field Values
  - numCellsPerTile_
```
private long numCellsPerTile_
```
  - memoizedIsInitialized
```
private byte memoizedIsInitialized
```
  - serialVersionUID
```
private static final long serialVersionUID
```
    See Also:
    
    Constant Field Values
  - DEFAULT_INSTANCE
```
private static final GenomicsDBImportConfiguration.ImportConfiguration DEFAULT_INSTANCE
```
  - PARSER
```
@Deprecated
public static final com.google.protobuf.Parser<GenomicsDBImportConfiguration.ImportConfiguration> PARSER
```
    Deprecated.
- Constructor Detail
  - ImportConfiguration
```
private ImportConfiguration(com.google.protobuf.GeneratedMessage.Builder<?> builder)
```
  - ImportConfiguration
```
private ImportConfiguration()
```
  - ImportConfiguration
```
private ImportConfiguration(com.google.protobuf.CodedInputStream input,
                            com.google.protobuf.ExtensionRegistryLite extensionRegistry)
```
- Method Detail
  - getUnknownFields
```
public final com.google.protobuf.UnknownFieldSet getUnknownFields()
```
    Specified by:
    
    getUnknownFields in interface com.google.protobuf.MessageOrBuilder
    
    Overrides:
    
    getUnknownFields in class com.google.protobuf.GeneratedMessage
  - getDescriptor
```
public static final com.google.protobuf.Descriptors.Descriptor getDescriptor()
```
  - internalGetFieldAccessorTable
```
protected com.google.protobuf.GeneratedMessage.FieldAccessorTable internalGetFieldAccessorTable()
```
    Specified by:
    
    internalGetFieldAccessorTable in class com.google.protobuf.GeneratedMessage
  - hasSizePerColumnPartition
```
public boolean hasSizePerColumnPartition()
```
    required int64 size_per_column_partition = 7 [default = 10240];
    
    Specified by:
    
    hasSizePerColumnPartition in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getSizePerColumnPartition
```
public long getSizePerColumnPartition()
```
    required int64 size_per_column_partition = 7 [default = 10240];
    
    Specified by:
    
    getSizePerColumnPartition in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - hasRowBasedPartitioning
```
public boolean hasRowBasedPartitioning()
```
    optional bool row_based_partitioning = 1 [default = false];
    
    Specified by:
    
    hasRowBasedPartitioning in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getRowBasedPartitioning
```
public boolean getRowBasedPartitioning()
```
    optional bool row_based_partitioning = 1 [default = false];
    
    Specified by:
    
    getRowBasedPartitioning in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - hasProduceCombinedVcf
```
public boolean hasProduceCombinedVcf()
```
    optional bool produce_combined_vcf = 2 [default = false];
    
    Specified by:
    
    hasProduceCombinedVcf in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getProduceCombinedVcf
```
public boolean getProduceCombinedVcf()
```
    optional bool produce_combined_vcf = 2 [default = false];
    
    Specified by:
    
    getProduceCombinedVcf in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - hasProduceTiledbArray
```
public boolean hasProduceTiledbArray()
```
    optional bool produce_tiledb_array = 3 [default = true];
    
    Specified by:
    
    hasProduceTiledbArray in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getProduceTiledbArray
```
public boolean getProduceTiledbArray()
```
    optional bool produce_tiledb_array = 3 [default = true];
    
    Specified by:
    
    getProduceTiledbArray in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getColumnPartitionsList
```
public List<GenomicsDBImportConfiguration.Partition> getColumnPartitionsList()
```
    repeated .Partition column_partitions = 4;
    
    Specified by:
    
    getColumnPartitionsList in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getColumnPartitionsOrBuilderList
```
public List<? extends GenomicsDBImportConfiguration.PartitionOrBuilder> getColumnPartitionsOrBuilderList()
```
    repeated .Partition column_partitions = 4;
    
    Specified by:
    
    getColumnPartitionsOrBuilderList in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getColumnPartitionsCount
```
public int getColumnPartitionsCount()
```
    repeated .Partition column_partitions = 4;
    
    Specified by:
    
    getColumnPartitionsCount in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getColumnPartitions
```
public GenomicsDBImportConfiguration.Partition getColumnPartitions(int index)
```
    repeated .Partition column_partitions = 4;
    
    Specified by:
    
    getColumnPartitions in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getColumnPartitionsOrBuilder
```
public GenomicsDBImportConfiguration.PartitionOrBuilder getColumnPartitionsOrBuilder(int index)
```
    repeated .Partition column_partitions = 4;
    
    Specified by:
    
    getColumnPartitionsOrBuilder in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - hasVidMappingFile
```
public boolean hasVidMappingFile()
```
    optional string vid_mapping_file = 5;
    
    Specified by:
    
    hasVidMappingFile in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getVidMappingFile
```
public String getVidMappingFile()
```
    optional string vid_mapping_file = 5;
    
    Specified by:
    
    getVidMappingFile in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getVidMappingFileBytes
```
public com.google.protobuf.ByteString getVidMappingFileBytes()
```
    optional string vid_mapping_file = 5;
    
    Specified by:
    
    getVidMappingFileBytes in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - hasCallsetMappingFile
```
public boolean hasCallsetMappingFile()
```
    optional string callset_mapping_file = 6;
    
    Specified by:
    
    hasCallsetMappingFile in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getCallsetMappingFile
```
public String getCallsetMappingFile()
```
    optional string callset_mapping_file = 6;
    
    Specified by:
    
    getCallsetMappingFile in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getCallsetMappingFileBytes
```
public com.google.protobuf.ByteString getCallsetMappingFileBytes()
```
    optional string callset_mapping_file = 6;
    
    Specified by:
    
    getCallsetMappingFileBytes in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - hasTreatDeletionsAsIntervals
```
public boolean hasTreatDeletionsAsIntervals()
```
    optional bool treat_deletions_as_intervals = 8 [default = true];
    
    Specified by:
    
    hasTreatDeletionsAsIntervals in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getTreatDeletionsAsIntervals
```
public boolean getTreatDeletionsAsIntervals()
```
    optional bool treat_deletions_as_intervals = 8 [default = true];
    
    Specified by:
    
    getTreatDeletionsAsIntervals in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - hasNumParallelVcfFiles
```
public boolean hasNumParallelVcfFiles()
```
    optional int32 num_parallel_vcf_files = 9 [default = 1];
    
    Specified by:
    
    hasNumParallelVcfFiles in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getNumParallelVcfFiles
```
public int getNumParallelVcfFiles()
```
    optional int32 num_parallel_vcf_files = 9 [default = 1];
    
    Specified by:
    
    getNumParallelVcfFiles in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - hasDeleteAndCreateTiledbArray
```
public boolean hasDeleteAndCreateTiledbArray()
```
    optional bool delete_and_create_tiledb_array = 10 [default = false];
    
    Specified by:
    
    hasDeleteAndCreateTiledbArray in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getDeleteAndCreateTiledbArray
```
public boolean getDeleteAndCreateTiledbArray()
```
    optional bool delete_and_create_tiledb_array = 10 [default = false];
    
    Specified by:
    
    getDeleteAndCreateTiledbArray in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - hasDoPingPongBuffering
```
public boolean hasDoPingPongBuffering()
```
    optional bool do_ping_pong_buffering = 11 [default = true];
    
    Specified by:
    
    hasDoPingPongBuffering in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getDoPingPongBuffering
```
public boolean getDoPingPongBuffering()
```
    optional bool do_ping_pong_buffering = 11 [default = true];
    
    Specified by:
    
    getDoPingPongBuffering in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - hasOffloadVcfOutputProcessing
```
public boolean hasOffloadVcfOutputProcessing()
```
    optional bool offload_vcf_output_processing = 12 [default = true];
    
    Specified by:
    
    hasOffloadVcfOutputProcessing in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getOffloadVcfOutputProcessing
```
public boolean getOffloadVcfOutputProcessing()
```
    optional bool offload_vcf_output_processing = 12 [default = true];
    
    Specified by:
    
    getOffloadVcfOutputProcessing in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - hasDiscardVcfIndex
```
public boolean hasDiscardVcfIndex()
```
    optional bool discard_vcf_index = 13 [default = true];
    
    Specified by:
    
    hasDiscardVcfIndex in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getDiscardVcfIndex
```
public boolean getDiscardVcfIndex()
```
    optional bool discard_vcf_index = 13 [default = true];
    
    Specified by:
    
    getDiscardVcfIndex in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - hasSegmentSize
```
public boolean hasSegmentSize()
```
    optional int64 segment_size = 14 [default = 10485760];
    
    Specified by:
    
    hasSegmentSize in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getSegmentSize
```
public long getSegmentSize()
```
    optional int64 segment_size = 14 [default = 10485760];
    
    Specified by:
    
    getSegmentSize in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - hasCompressTiledbArray
```
public boolean hasCompressTiledbArray()
```
    optional bool compress_tiledb_array = 15 [default = true];
    
    Specified by:
    
    hasCompressTiledbArray in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getCompressTiledbArray
```
public boolean getCompressTiledbArray()
```
    optional bool compress_tiledb_array = 15 [default = true];
    
    Specified by:
    
    getCompressTiledbArray in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - hasNumCellsPerTile
```
public boolean hasNumCellsPerTile()
```
    optional int64 num_cells_per_tile = 16 [default = 1000];
    
    Specified by:
    
    hasNumCellsPerTile in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - getNumCellsPerTile
```
public long getNumCellsPerTile()
```
    optional int64 num_cells_per_tile = 16 [default = 1000];
    
    Specified by:
    
    getNumCellsPerTile in interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  - isInitialized
```
public final boolean isInitialized()
```
    Specified by:
    
    isInitialized in interface com.google.protobuf.MessageLiteOrBuilder
    
    Overrides:
    
    isInitialized in class com.google.protobuf.GeneratedMessage
  - writeTo
```
public void writeTo(com.google.protobuf.CodedOutputStream output)
             throws IOException
```
    Specified by:
    
    writeTo in interface com.google.protobuf.MessageLite
    
    Overrides:
    
    writeTo in class com.google.protobuf.GeneratedMessage
    
    Throws:
    
    IOException
  - getSerializedSize
```
public int getSerializedSize()
```
    Specified by:
    
    getSerializedSize in interface com.google.protobuf.MessageLite
    
    Overrides:
    
    getSerializedSize in class com.google.protobuf.GeneratedMessage
  - parseFrom
```
public static GenomicsDBImportConfiguration.ImportConfiguration parseFrom(com.google.protobuf.ByteString data)
                                                                   throws com.google.protobuf.InvalidProtocolBufferException
```
    Throws:
    
    com.google.protobuf.InvalidProtocolBufferException
  - parseFrom
```
public static GenomicsDBImportConfiguration.ImportConfiguration parseFrom(com.google.protobuf.ByteString data,
                                                                          com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                                                   throws com.google.protobuf.InvalidProtocolBufferException
```
    Throws:
    
    com.google.protobuf.InvalidProtocolBufferException
  - parseFrom
```
public static GenomicsDBImportConfiguration.ImportConfiguration parseFrom(byte[] data)
                                                                   throws com.google.protobuf.InvalidProtocolBufferException
```
    Throws:
    
    com.google.protobuf.InvalidProtocolBufferException
  - parseFrom
```
public static GenomicsDBImportConfiguration.ImportConfiguration parseFrom(byte[] data,
                                                                          com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                                                   throws com.google.protobuf.InvalidProtocolBufferException
```
    Throws:
    
    com.google.protobuf.InvalidProtocolBufferException
  - parseFrom
```
public static GenomicsDBImportConfiguration.ImportConfiguration parseFrom(InputStream input)
                                                                   throws IOException
```
    Throws:
    
    IOException
  - parseFrom
```
public static GenomicsDBImportConfiguration.ImportConfiguration parseFrom(InputStream input,
                                                                          com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                                                   throws IOException
```
    Throws:
    
    IOException
  - parseDelimitedFrom
```
public static GenomicsDBImportConfiguration.ImportConfiguration parseDelimitedFrom(InputStream input)
                                                                            throws IOException
```
    Throws:
    
    IOException
  - parseDelimitedFrom
```
public static GenomicsDBImportConfiguration.ImportConfiguration parseDelimitedFrom(InputStream input,
                                                                                   com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                                                            throws IOException
```
    Throws:
    
    IOException
  - parseFrom
```
public static GenomicsDBImportConfiguration.ImportConfiguration parseFrom(com.google.protobuf.CodedInputStream input)
                                                                   throws IOException
```
    Throws:
    
    IOException
  - parseFrom
```
public static GenomicsDBImportConfiguration.ImportConfiguration parseFrom(com.google.protobuf.CodedInputStream input,
                                                                          com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                                                   throws IOException
```
    Throws:
    
    IOException
  - newBuilderForType
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder newBuilderForType()
```
    Specified by:
    
    newBuilderForType in interface com.google.protobuf.Message
    
    Specified by:
    
    newBuilderForType in interface com.google.protobuf.MessageLite
  - newBuilder
```
public static GenomicsDBImportConfiguration.ImportConfiguration.Builder newBuilder()
```
  - newBuilder
```
public static GenomicsDBImportConfiguration.ImportConfiguration.Builder newBuilder(GenomicsDBImportConfiguration.ImportConfiguration prototype)
```
  - toBuilder
```
public GenomicsDBImportConfiguration.ImportConfiguration.Builder toBuilder()
```
    Specified by:
    
    toBuilder in interface com.google.protobuf.Message
    
    Specified by:
    
    toBuilder in interface com.google.protobuf.MessageLite
  - newBuilderForType
```
protected GenomicsDBImportConfiguration.ImportConfiguration.Builder newBuilderForType(com.google.protobuf.GeneratedMessage.BuilderParent parent)
```
    Specified by:
    
    newBuilderForType in class com.google.protobuf.GeneratedMessage
  - getDefaultInstance
```
public static GenomicsDBImportConfiguration.ImportConfiguration getDefaultInstance()
```
  - parser
```
public static com.google.protobuf.Parser<GenomicsDBImportConfiguration.ImportConfiguration> parser()
```
  - getParserForType
```
public com.google.protobuf.Parser<GenomicsDBImportConfiguration.ImportConfiguration> getParserForType()
```
    Specified by:
    
    getParserForType in interface com.google.protobuf.Message
    
    Specified by:
    
    getParserForType in interface com.google.protobuf.MessageLite
    
    Overrides:
    
    getParserForType in class com.google.protobuf.GeneratedMessage
  - getDefaultInstanceForType
```
public GenomicsDBImportConfiguration.ImportConfiguration getDefaultInstanceForType()
```
    Specified by:
    
    getDefaultInstanceForType in interface com.google.protobuf.MessageLiteOrBuilder
    
    Specified by:
    
    getDefaultInstanceForType in interface com.google.protobuf.MessageOrBuilder

Class GenomicsDBImportConfiguration.ImportConfiguration

Nested Class Summary

Nested classes/interfaces inherited from class com.google.protobuf.GeneratedMessage

Field Summary

Fields inherited from class com.google.protobuf.GeneratedMessage

Fields inherited from class com.google.protobuf.AbstractMessage

Fields inherited from class com.google.protobuf.AbstractMessageLite

Constructor Summary

Method Summary

Methods inherited from class com.google.protobuf.GeneratedMessage

Methods inherited from class com.google.protobuf.AbstractMessage

Methods inherited from class com.google.protobuf.AbstractMessageLite

Methods inherited from class java.lang.Object

Methods inherited from interface com.google.protobuf.MessageOrBuilder

Methods inherited from interface com.google.protobuf.MessageLite

Field Detail

bitField0_

SIZE_PER_COLUMN_PARTITION_FIELD_NUMBER

sizePerColumnPartition_

ROW_BASED_PARTITIONING_FIELD_NUMBER

rowBasedPartitioning_

PRODUCE_COMBINED_VCF_FIELD_NUMBER

produceCombinedVcf_

PRODUCE_TILEDB_ARRAY_FIELD_NUMBER

produceTiledbArray_

COLUMN_PARTITIONS_FIELD_NUMBER

columnPartitions_

VID_MAPPING_FILE_FIELD_NUMBER

vidMappingFile_

CALLSET_MAPPING_FILE_FIELD_NUMBER

callsetMappingFile_

TREAT_DELETIONS_AS_INTERVALS_FIELD_NUMBER

treatDeletionsAsIntervals_

NUM_PARALLEL_VCF_FILES_FIELD_NUMBER

numParallelVcfFiles_

DELETE_AND_CREATE_TILEDB_ARRAY_FIELD_NUMBER

deleteAndCreateTiledbArray_

DO_PING_PONG_BUFFERING_FIELD_NUMBER

doPingPongBuffering_

OFFLOAD_VCF_OUTPUT_PROCESSING_FIELD_NUMBER

offloadVcfOutputProcessing_

DISCARD_VCF_INDEX_FIELD_NUMBER

discardVcfIndex_

SEGMENT_SIZE_FIELD_NUMBER

segmentSize_

COMPRESS_TILEDB_ARRAY_FIELD_NUMBER

compressTiledbArray_

NUM_CELLS_PER_TILE_FIELD_NUMBER

numCellsPerTile_

memoizedIsInitialized

serialVersionUID

DEFAULT_INSTANCE

PARSER

Constructor Detail

ImportConfiguration

ImportConfiguration

ImportConfiguration

Method Detail

getUnknownFields

getDescriptor

internalGetFieldAccessorTable

hasSizePerColumnPartition

getSizePerColumnPartition

hasRowBasedPartitioning

getRowBasedPartitioning

hasProduceCombinedVcf

getProduceCombinedVcf

hasProduceTiledbArray

getProduceTiledbArray

getColumnPartitionsList

getColumnPartitionsOrBuilderList

getColumnPartitionsCount

getColumnPartitions

getColumnPartitionsOrBuilder

hasVidMappingFile

getVidMappingFile

getVidMappingFileBytes

hasCallsetMappingFile

getCallsetMappingFile

getCallsetMappingFileBytes