GenomicsDBImportConfiguration.ImportConfigurationOrBuilder (com.intel:genomicsdb-gatk4 0.4.0 API)

All Superinterfaces:

com.google.protobuf.MessageLiteOrBuilder, com.google.protobuf.MessageOrBuilder

All Known Implementing Classes:

GenomicsDBImportConfiguration.ImportConfiguration, GenomicsDBImportConfiguration.ImportConfiguration.Builder

Enclosing class:

GenomicsDBImportConfiguration
```
public static interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
extends com.google.protobuf.MessageOrBuilder
```

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method and Description
`String`	`getCallsetMappingFile()` `optional string callset_mapping_file = 6;`
`com.google.protobuf.ByteString`	`getCallsetMappingFileBytes()` `optional string callset_mapping_file = 6;`
`GenomicsDBImportConfiguration.Partition`	`getColumnPartitions(int index)` `repeated .Partition column_partitions = 4;`
`int`	`getColumnPartitionsCount()` `repeated .Partition column_partitions = 4;`
`List<GenomicsDBImportConfiguration.Partition>`	`getColumnPartitionsList()` `repeated .Partition column_partitions = 4;`
`GenomicsDBImportConfiguration.PartitionOrBuilder`	`getColumnPartitionsOrBuilder(int index)` `repeated .Partition column_partitions = 4;`
`List<? extends GenomicsDBImportConfiguration.PartitionOrBuilder>`	`getColumnPartitionsOrBuilderList()` `repeated .Partition column_partitions = 4;`
`boolean`	`getCompressTiledbArray()` `optional bool compress_tiledb_array = 15 [default = true];`
`boolean`	`getDeleteAndCreateTiledbArray()` `optional bool delete_and_create_tiledb_array = 10 [default = false];`
`boolean`	`getDiscardVcfIndex()` `optional bool discard_vcf_index = 13 [default = true];`
`boolean`	`getDoPingPongBuffering()` `optional bool do_ping_pong_buffering = 11 [default = true];`
`long`	`getNumCellsPerTile()` `optional int64 num_cells_per_tile = 16 [default = 1000];`
`int`	`getNumParallelVcfFiles()` `optional int32 num_parallel_vcf_files = 9 [default = 1];`
`boolean`	`getOffloadVcfOutputProcessing()` `optional bool offload_vcf_output_processing = 12 [default = true];`
`boolean`	`getProduceCombinedVcf()` `optional bool produce_combined_vcf = 2 [default = false];`
`boolean`	`getProduceTiledbArray()` `optional bool produce_tiledb_array = 3 [default = true];`
`boolean`	`getRowBasedPartitioning()` `optional bool row_based_partitioning = 1 [default = false];`
`long`	`getSegmentSize()` `optional int64 segment_size = 14 [default = 10485760];`
`long`	`getSizePerColumnPartition()` `required int64 size_per_column_partition = 7 [default = 10240];`
`boolean`	`getTreatDeletionsAsIntervals()` `optional bool treat_deletions_as_intervals = 8 [default = true];`
`String`	`getVidMappingFile()` `optional string vid_mapping_file = 5;`
`com.google.protobuf.ByteString`	`getVidMappingFileBytes()` `optional string vid_mapping_file = 5;`
`boolean`	`hasCallsetMappingFile()` `optional string callset_mapping_file = 6;`
`boolean`	`hasCompressTiledbArray()` `optional bool compress_tiledb_array = 15 [default = true];`
`boolean`	`hasDeleteAndCreateTiledbArray()` `optional bool delete_and_create_tiledb_array = 10 [default = false];`
`boolean`	`hasDiscardVcfIndex()` `optional bool discard_vcf_index = 13 [default = true];`
`boolean`	`hasDoPingPongBuffering()` `optional bool do_ping_pong_buffering = 11 [default = true];`
`boolean`	`hasNumCellsPerTile()` `optional int64 num_cells_per_tile = 16 [default = 1000];`
`boolean`	`hasNumParallelVcfFiles()` `optional int32 num_parallel_vcf_files = 9 [default = 1];`
`boolean`	`hasOffloadVcfOutputProcessing()` `optional bool offload_vcf_output_processing = 12 [default = true];`
`boolean`	`hasProduceCombinedVcf()` `optional bool produce_combined_vcf = 2 [default = false];`
`boolean`	`hasProduceTiledbArray()` `optional bool produce_tiledb_array = 3 [default = true];`
`boolean`	`hasRowBasedPartitioning()` `optional bool row_based_partitioning = 1 [default = false];`
`boolean`	`hasSegmentSize()` `optional int64 segment_size = 14 [default = 10485760];`
`boolean`	`hasSizePerColumnPartition()` `required int64 size_per_column_partition = 7 [default = 10240];`
`boolean`	`hasTreatDeletionsAsIntervals()` `optional bool treat_deletions_as_intervals = 8 [default = true];`
`boolean`	`hasVidMappingFile()` `optional string vid_mapping_file = 5;`

Methods inherited from interface com.google.protobuf.MessageOrBuilder
findInitializationErrors, getAllFields, getDefaultInstanceForType, getDescriptorForType, getField, getInitializationErrorString, getOneofFieldDescriptor, getRepeatedField, getRepeatedFieldCount, getUnknownFields, hasField, hasOneof

Methods inherited from interface com.google.protobuf.MessageLiteOrBuilder
isInitialized

- Method Detail
  - hasSizePerColumnPartition
```
boolean hasSizePerColumnPartition()
```
    required int64 size_per_column_partition = 7 [default = 10240];
  - getSizePerColumnPartition
```
long getSizePerColumnPartition()
```
    required int64 size_per_column_partition = 7 [default = 10240];
  - hasRowBasedPartitioning
```
boolean hasRowBasedPartitioning()
```
    optional bool row_based_partitioning = 1 [default = false];
  - getRowBasedPartitioning
```
boolean getRowBasedPartitioning()
```
    optional bool row_based_partitioning = 1 [default = false];
  - hasProduceCombinedVcf
```
boolean hasProduceCombinedVcf()
```
    optional bool produce_combined_vcf = 2 [default = false];
  - getProduceCombinedVcf
```
boolean getProduceCombinedVcf()
```
    optional bool produce_combined_vcf = 2 [default = false];
  - hasProduceTiledbArray
```
boolean hasProduceTiledbArray()
```
    optional bool produce_tiledb_array = 3 [default = true];
  - getProduceTiledbArray
```
boolean getProduceTiledbArray()
```
    optional bool produce_tiledb_array = 3 [default = true];
  - getColumnPartitionsList
```
List<GenomicsDBImportConfiguration.Partition> getColumnPartitionsList()
```
    repeated .Partition column_partitions = 4;
  - getColumnPartitions
```
GenomicsDBImportConfiguration.Partition getColumnPartitions(int index)
```
    repeated .Partition column_partitions = 4;
  - getColumnPartitionsCount
```
int getColumnPartitionsCount()
```
    repeated .Partition column_partitions = 4;
  - getColumnPartitionsOrBuilderList
```
List<? extends GenomicsDBImportConfiguration.PartitionOrBuilder> getColumnPartitionsOrBuilderList()
```
    repeated .Partition column_partitions = 4;
  - getColumnPartitionsOrBuilder
```
GenomicsDBImportConfiguration.PartitionOrBuilder getColumnPartitionsOrBuilder(int index)
```
    repeated .Partition column_partitions = 4;
  - hasVidMappingFile
```
boolean hasVidMappingFile()
```
    optional string vid_mapping_file = 5;
  - getVidMappingFile
```
String getVidMappingFile()
```
    optional string vid_mapping_file = 5;
  - getVidMappingFileBytes
```
com.google.protobuf.ByteString getVidMappingFileBytes()
```
    optional string vid_mapping_file = 5;
  - hasCallsetMappingFile
```
boolean hasCallsetMappingFile()
```
    optional string callset_mapping_file = 6;
  - getCallsetMappingFile
```
String getCallsetMappingFile()
```
    optional string callset_mapping_file = 6;
  - getCallsetMappingFileBytes
```
com.google.protobuf.ByteString getCallsetMappingFileBytes()
```
    optional string callset_mapping_file = 6;
  - hasTreatDeletionsAsIntervals
```
boolean hasTreatDeletionsAsIntervals()
```
    optional bool treat_deletions_as_intervals = 8 [default = true];
  - getTreatDeletionsAsIntervals
```
boolean getTreatDeletionsAsIntervals()
```
    optional bool treat_deletions_as_intervals = 8 [default = true];
  - hasNumParallelVcfFiles
```
boolean hasNumParallelVcfFiles()
```
    optional int32 num_parallel_vcf_files = 9 [default = 1];
  - getNumParallelVcfFiles
```
int getNumParallelVcfFiles()
```
    optional int32 num_parallel_vcf_files = 9 [default = 1];
  - hasDeleteAndCreateTiledbArray
```
boolean hasDeleteAndCreateTiledbArray()
```
    optional bool delete_and_create_tiledb_array = 10 [default = false];
  - getDeleteAndCreateTiledbArray
```
boolean getDeleteAndCreateTiledbArray()
```
    optional bool delete_and_create_tiledb_array = 10 [default = false];
  - hasDoPingPongBuffering
```
boolean hasDoPingPongBuffering()
```
    optional bool do_ping_pong_buffering = 11 [default = true];
  - getDoPingPongBuffering
```
boolean getDoPingPongBuffering()
```
    optional bool do_ping_pong_buffering = 11 [default = true];
  - hasOffloadVcfOutputProcessing
```
boolean hasOffloadVcfOutputProcessing()
```
    optional bool offload_vcf_output_processing = 12 [default = true];
  - getOffloadVcfOutputProcessing
```
boolean getOffloadVcfOutputProcessing()
```
    optional bool offload_vcf_output_processing = 12 [default = true];
  - hasDiscardVcfIndex
```
boolean hasDiscardVcfIndex()
```
    optional bool discard_vcf_index = 13 [default = true];
  - getDiscardVcfIndex
```
boolean getDiscardVcfIndex()
```
    optional bool discard_vcf_index = 13 [default = true];
  - hasSegmentSize
```
boolean hasSegmentSize()
```
    optional int64 segment_size = 14 [default = 10485760];
  - getSegmentSize
```
long getSegmentSize()
```
    optional int64 segment_size = 14 [default = 10485760];
  - hasCompressTiledbArray
```
boolean hasCompressTiledbArray()
```
    optional bool compress_tiledb_array = 15 [default = true];
  - getCompressTiledbArray
```
boolean getCompressTiledbArray()
```
    optional bool compress_tiledb_array = 15 [default = true];
  - hasNumCellsPerTile
```
boolean hasNumCellsPerTile()
```
    optional int64 num_cells_per_tile = 16 [default = 1000];
  - getNumCellsPerTile
```
long getNumCellsPerTile()
```
    optional int64 num_cells_per_tile = 16 [default = 1000];

Interface GenomicsDBImportConfiguration.ImportConfigurationOrBuilder

Method Summary

Methods inherited from interface com.google.protobuf.MessageOrBuilder

Methods inherited from interface com.google.protobuf.MessageLiteOrBuilder

Method Detail

hasSizePerColumnPartition

getSizePerColumnPartition

hasRowBasedPartitioning

getRowBasedPartitioning

hasProduceCombinedVcf

getProduceCombinedVcf

hasProduceTiledbArray

getProduceTiledbArray

getColumnPartitionsList

getColumnPartitions

getColumnPartitionsCount

getColumnPartitionsOrBuilderList

getColumnPartitionsOrBuilder

hasVidMappingFile

getVidMappingFile

getVidMappingFileBytes

hasCallsetMappingFile

getCallsetMappingFile

getCallsetMappingFileBytes

hasTreatDeletionsAsIntervals

getTreatDeletionsAsIntervals

hasNumParallelVcfFiles

getNumParallelVcfFiles

hasDeleteAndCreateTiledbArray

getDeleteAndCreateTiledbArray

hasDoPingPongBuffering

getDoPingPongBuffering

hasOffloadVcfOutputProcessing

getOffloadVcfOutputProcessing

hasDiscardVcfIndex

getDiscardVcfIndex

hasSegmentSize

getSegmentSize

hasCompressTiledbArray

getCompressTiledbArray

hasNumCellsPerTile

getNumCellsPerTile