com.intel.genomicsdb

Class GenomicsDBPartitionInfo

java.lang.Object

com.intel.genomicsdb.GenomicsDBPartitionInfo

All Implemented Interfaces:

Serializable

class GenomicsDBPartitionInfo
extends Object
implements Serializable

Maintain global information on how variant data is partitioned across multiple nodes (if loaded with mpiexec) The assumption is that every object described one partition as: {"begin": 0, "workspace":"/home/forall/tiledb-ws", "array": "test0", "vcf_output_filename":"/home/forall/lihao/mytest/test0.vcf.gz" }

Field Summary

Fields

Modifier and Type	Field and Description
private Integer	beginPosition
private String	tileDBArrayName
private String	tileDBWorkspace
private String	VCFOutputFileName

Constructor Summary

Constructors

Constructor and Description
GenomicsDBPartitionInfo(Integer pos, String workspace, String arrayName, String vcfOutput)

Method Summary

Modifier and Type	Method and Description
String	toJSON() Create a JSON string from the partition info object
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

beginPosition

private Integer beginPosition

tileDBWorkspace

private String tileDBWorkspace

tileDBArrayName

private String tileDBArrayName

VCFOutputFileName

private String VCFOutputFileName

Constructor Detail

GenomicsDBPartitionInfo

public GenomicsDBPartitionInfo(Integer pos,
                               String workspace,
                               String arrayName,
                               String vcfOutput)

Method Detail

toString

public String toString()

Overrides:

toString in class Object

toJSON

public String toJSON()
              throws IOException

Create a JSON string from the partition info object

Returns:

A JSON string of the partition info

Throws:

IOException - write throws IOException