Uses of Class
com.intel.genomicsdb.GenomicsDBCallsetsMapProto.CallsetMappingPB

Uses of GenomicsDBCallsetsMapProto.CallsetMappingPB in com.intel.genomicsdb

Fields in com.intel.genomicsdb declared as GenomicsDBCallsetsMapProto.CallsetMappingPB

Modifier and Type	Field and Description
private static GenomicsDBCallsetsMapProto.CallsetMappingPB	GenomicsDBCallsetsMapProto.CallsetMappingPB.DEFAULT_INSTANCE
private GenomicsDBCallsetsMapProto.CallsetMappingPB	GenomicsDBImporter.mCallsetMap

Fields in com.intel.genomicsdb with type parameters of type GenomicsDBCallsetsMapProto.CallsetMappingPB

Modifier and Type	Field and Description
static com.google.protobuf.Parser<GenomicsDBCallsetsMapProto.CallsetMappingPB>	GenomicsDBCallsetsMapProto.CallsetMappingPB.PARSER Deprecated.

Methods in com.intel.genomicsdb that return GenomicsDBCallsetsMapProto.CallsetMappingPB

Modifier and Type	Method and Description
GenomicsDBCallsetsMapProto.CallsetMappingPB	GenomicsDBCallsetsMapProto.CallsetMappingPB.Builder.build()
GenomicsDBCallsetsMapProto.CallsetMappingPB	GenomicsDBCallsetsMapProto.CallsetMappingPB.Builder.buildPartial()
private GenomicsDBCallsetsMapProto.CallsetMappingPB	GenomicsDBImporter.generateSortedCallSetMap(Map<String,htsjdk.tribble.FeatureReader<htsjdk.variant.variantcontext.VariantContext>> variants, boolean useSamplesInOrderProvided) Creates a sorted list of callsets and generates unique TileDB row indices for them.
static GenomicsDBCallsetsMapProto.CallsetMappingPB	GenomicsDBCallsetsMapProto.CallsetMappingPB.getDefaultInstance()
GenomicsDBCallsetsMapProto.CallsetMappingPB	GenomicsDBCallsetsMapProto.CallsetMappingPB.getDefaultInstanceForType()
GenomicsDBCallsetsMapProto.CallsetMappingPB	GenomicsDBCallsetsMapProto.CallsetMappingPB.Builder.getDefaultInstanceForType()
static GenomicsDBCallsetsMapProto.CallsetMappingPB	GenomicsDBCallsetsMapProto.CallsetMappingPB.parseDelimitedFrom(InputStream input)
static GenomicsDBCallsetsMapProto.CallsetMappingPB	GenomicsDBCallsetsMapProto.CallsetMappingPB.parseDelimitedFrom(InputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static GenomicsDBCallsetsMapProto.CallsetMappingPB	GenomicsDBCallsetsMapProto.CallsetMappingPB.parseFrom(byte[] data)
static GenomicsDBCallsetsMapProto.CallsetMappingPB	GenomicsDBCallsetsMapProto.CallsetMappingPB.parseFrom(byte[] data, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static GenomicsDBCallsetsMapProto.CallsetMappingPB	GenomicsDBCallsetsMapProto.CallsetMappingPB.parseFrom(com.google.protobuf.ByteString data)
static GenomicsDBCallsetsMapProto.CallsetMappingPB	GenomicsDBCallsetsMapProto.CallsetMappingPB.parseFrom(com.google.protobuf.ByteString data, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static GenomicsDBCallsetsMapProto.CallsetMappingPB	GenomicsDBCallsetsMapProto.CallsetMappingPB.parseFrom(com.google.protobuf.CodedInputStream input)
static GenomicsDBCallsetsMapProto.CallsetMappingPB	GenomicsDBCallsetsMapProto.CallsetMappingPB.parseFrom(com.google.protobuf.CodedInputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static GenomicsDBCallsetsMapProto.CallsetMappingPB	GenomicsDBCallsetsMapProto.CallsetMappingPB.parseFrom(InputStream input)
static GenomicsDBCallsetsMapProto.CallsetMappingPB	GenomicsDBCallsetsMapProto.CallsetMappingPB.parseFrom(InputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)

Methods in com.intel.genomicsdb that return types with arguments of type GenomicsDBCallsetsMapProto.CallsetMappingPB

Modifier and Type	Method and Description
com.google.protobuf.Parser<GenomicsDBCallsetsMapProto.CallsetMappingPB>	GenomicsDBCallsetsMapProto.CallsetMappingPB.getParserForType()
static com.google.protobuf.Parser<GenomicsDBCallsetsMapProto.CallsetMappingPB>	GenomicsDBCallsetsMapProto.CallsetMappingPB.parser()

Methods in com.intel.genomicsdb with parameters of type GenomicsDBCallsetsMapProto.CallsetMappingPB

Modifier and Type	Method and Description
GenomicsDBCallsetsMapProto.CallsetMappingPB.Builder	GenomicsDBCallsetsMapProto.CallsetMappingPB.Builder.mergeFrom(GenomicsDBCallsetsMapProto.CallsetMappingPB other)
static GenomicsDBCallsetsMapProto.CallsetMappingPB.Builder	GenomicsDBCallsetsMapProto.CallsetMappingPB.newBuilder(GenomicsDBCallsetsMapProto.CallsetMappingPB prototype)