| Modifier and Type | Method and Description |
|---|---|
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.addAllColumnPartitions(Iterable<? extends GenomicsDBImportConfiguration.Partition> values)
repeated .Partition column_partitions = 4; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.addColumnPartitions(GenomicsDBImportConfiguration.Partition.Builder builderForValue)
repeated .Partition column_partitions = 4; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.addColumnPartitions(GenomicsDBImportConfiguration.Partition value)
repeated .Partition column_partitions = 4; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.addColumnPartitions(int index,
GenomicsDBImportConfiguration.Partition.Builder builderForValue)
repeated .Partition column_partitions = 4; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.addColumnPartitions(int index,
GenomicsDBImportConfiguration.Partition value)
repeated .Partition column_partitions = 4; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.clear() |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.clearCallsetMappingFile()
optional string callset_mapping_file = 6; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.clearColumnPartitions()
repeated .Partition column_partitions = 4; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.clearCompressTiledbArray()
optional bool compress_tiledb_array = 15 [default = true]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.clearDeleteAndCreateTiledbArray()
optional bool delete_and_create_tiledb_array = 10 [default = false]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.clearDiscardVcfIndex()
optional bool discard_vcf_index = 13 [default = true]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.clearDoPingPongBuffering()
optional bool do_ping_pong_buffering = 11 [default = true]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.clearNumCellsPerTile()
optional int64 num_cells_per_tile = 16 [default = 1000]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.clearNumParallelVcfFiles()
optional int32 num_parallel_vcf_files = 9 [default = 1]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.clearOffloadVcfOutputProcessing()
optional bool offload_vcf_output_processing = 12 [default = true]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.clearProduceCombinedVcf()
optional bool produce_combined_vcf = 2 [default = false]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.clearProduceTiledbArray()
optional bool produce_tiledb_array = 3 [default = true]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.clearRowBasedPartitioning()
optional bool row_based_partitioning = 1 [default = false]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.clearSegmentSize()
optional int64 segment_size = 14 [default = 10485760]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.clearSizePerColumnPartition()
required int64 size_per_column_partition = 7 [default = 10240]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.clearTreatDeletionsAsIntervals()
optional bool treat_deletions_as_intervals = 8 [default = true]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.clearVidMappingFile()
optional string vid_mapping_file = 5; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.mergeFrom(com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry) |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.mergeFrom(GenomicsDBImportConfiguration.ImportConfiguration other) |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.mergeFrom(com.google.protobuf.Message other) |
static GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.newBuilder() |
static GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.newBuilder(GenomicsDBImportConfiguration.ImportConfiguration prototype) |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.newBuilderForType() |
protected GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.newBuilderForType(com.google.protobuf.GeneratedMessage.BuilderParent parent) |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.removeColumnPartitions(int index)
repeated .Partition column_partitions = 4; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setCallsetMappingFile(String value)
optional string callset_mapping_file = 6; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setCallsetMappingFileBytes(com.google.protobuf.ByteString value)
optional string callset_mapping_file = 6; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setColumnPartitions(int index,
GenomicsDBImportConfiguration.Partition.Builder builderForValue)
repeated .Partition column_partitions = 4; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setColumnPartitions(int index,
GenomicsDBImportConfiguration.Partition value)
repeated .Partition column_partitions = 4; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setCompressTiledbArray(boolean value)
optional bool compress_tiledb_array = 15 [default = true]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setDeleteAndCreateTiledbArray(boolean value)
optional bool delete_and_create_tiledb_array = 10 [default = false]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setDiscardVcfIndex(boolean value)
optional bool discard_vcf_index = 13 [default = true]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setDoPingPongBuffering(boolean value)
optional bool do_ping_pong_buffering = 11 [default = true]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setNumCellsPerTile(long value)
optional int64 num_cells_per_tile = 16 [default = 1000]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setNumParallelVcfFiles(int value)
optional int32 num_parallel_vcf_files = 9 [default = 1]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setOffloadVcfOutputProcessing(boolean value)
optional bool offload_vcf_output_processing = 12 [default = true]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setProduceCombinedVcf(boolean value)
optional bool produce_combined_vcf = 2 [default = false]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setProduceTiledbArray(boolean value)
optional bool produce_tiledb_array = 3 [default = true]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setRowBasedPartitioning(boolean value)
optional bool row_based_partitioning = 1 [default = false]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setSegmentSize(long value)
optional int64 segment_size = 14 [default = 10485760]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setSizePerColumnPartition(long value)
required int64 size_per_column_partition = 7 [default = 10240]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setTreatDeletionsAsIntervals(boolean value)
optional bool treat_deletions_as_intervals = 8 [default = true]; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setVidMappingFile(String value)
optional string vid_mapping_file = 5; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.Builder.setVidMappingFileBytes(com.google.protobuf.ByteString value)
optional string vid_mapping_file = 5; |
GenomicsDBImportConfiguration.ImportConfiguration.Builder |
GenomicsDBImportConfiguration.ImportConfiguration.toBuilder() |
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