| Modifier and Type | Method and Description |
|---|---|
<SOURCE> MultiChromosomeIterator<SOURCE> |
GenomicsDBImporter.columnPartitionIterator(htsjdk.tribble.AbstractFeatureReader<htsjdk.variant.variantcontext.VariantContext,SOURCE> reader)
Utility function that returns a MultiChromosomeIterator given an AbstractFeatureReader
that will iterate over the VariantContext objects provided by the reader belonging
to the column partition specified by this object's loader JSON file and rank/partition index
|
static <SOURCE> MultiChromosomeIterator<SOURCE> |
GenomicsDBImporter.columnPartitionIterator(htsjdk.tribble.AbstractFeatureReader<htsjdk.variant.variantcontext.VariantContext,SOURCE> reader,
String loaderJSONFile,
int partitionIdx)
Utility function that returns a MultiChromosomeIterator given an AbstractFeatureReader
that will iterate over the VariantContext objects provided by the reader belonging
to the column partition specified by the loader JSON file and rank/partition index
|
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