Constant Field Values

Contents

• com.intel.*

com.intel.*

com.intel.genomicsdb.GenomicsDBCallsetsMapProto.CallsetMappingPB

Modifier and Type	Constant Field	Value
public static final int	CALLSET_MAP_FIELD_NUMBER	1
private static final long	serialVersionUID	0L

com.intel.genomicsdb.GenomicsDBCallsetsMapProto.SampleIDToTileDBIDMap

Modifier and Type	Constant Field	Value
public static final int	IDX_IN_FILE_FIELD_NUMBER	3
public static final int	SAMPLE_NAME_FIELD_NUMBER	1
private static final long	serialVersionUID	0L
public static final int	STREAM_NAME_FIELD_NUMBER	4
public static final int	TILEDB_ROW_INDEX_FIELD_NUMBER	2

com.intel.genomicsdb.GenomicsDBConfiguration

Modifier and Type	Constant Field	Value
public static final String	LOADERJSON	"genomicsdb.input.loaderjsonfile"
public static final String	MPIHOSTFILE	"genomicsdb.input.mpi.hostfile"
public static final String	PARTITION_STRATEGY	"genomicsdb.partition.strategy"
public static final String	QUERYJSON	"genomicsdb.input.queryjsonfile"

com.intel.genomicsdb.GenomicsDBExportConfiguration.ColumnRange

Modifier and Type	Constant Field	Value
public static final int	HIGH_FIELD_NUMBER	2
public static final int	LOW_FIELD_NUMBER	1
private static final long	serialVersionUID	0L

com.intel.genomicsdb.GenomicsDBExportConfiguration.ColumnRangeList

Modifier and Type	Constant Field	Value
public static final int	RANGE_LIST_FIELD_NUMBER	1
private static final long	serialVersionUID	0L

com.intel.genomicsdb.GenomicsDBExportConfiguration.ExportConfiguration

Modifier and Type	Constant Field	Value
public static final int	ATTRIBUTES_FIELD_NUMBER	5
public static final int	QUERY_COLUMN_RANGES_FIELD_NUMBER	4
public static final int	REFERENCE_GENOME_FIELD_NUMBER	3
private static final long	serialVersionUID	0L
public static final int	TILEDB_ARRAY_NAME_FIELD_NUMBER	2
public static final int	TILEDB_WORKSPACE_FIELD_NUMBER	1

com.intel.genomicsdb.GenomicsDBImportConfiguration.ImportConfiguration

Modifier and Type	Constant Field	Value
public static final int	CALLSET_MAPPING_FILE_FIELD_NUMBER	6
public static final int	COLUMN_PARTITIONS_FIELD_NUMBER	4
public static final int	COMPRESS_TILEDB_ARRAY_FIELD_NUMBER	15
public static final int	DELETE_AND_CREATE_TILEDB_ARRAY_FIELD_NUMBER	10
public static final int	DISCARD_VCF_INDEX_FIELD_NUMBER	13
public static final int	DO_PING_PONG_BUFFERING_FIELD_NUMBER	11
public static final int	NUM_CELLS_PER_TILE_FIELD_NUMBER	16
public static final int	NUM_PARALLEL_VCF_FILES_FIELD_NUMBER	9
public static final int	OFFLOAD_VCF_OUTPUT_PROCESSING_FIELD_NUMBER	12
public static final int	PRODUCE_COMBINED_VCF_FIELD_NUMBER	2
public static final int	PRODUCE_TILEDB_ARRAY_FIELD_NUMBER	3
public static final int	ROW_BASED_PARTITIONING_FIELD_NUMBER	1
public static final int	SEGMENT_SIZE_FIELD_NUMBER	14
private static final long	serialVersionUID	0L
public static final int	SIZE_PER_COLUMN_PARTITION_FIELD_NUMBER	7
public static final int	TREAT_DELETIONS_AS_INTERVALS_FIELD_NUMBER	8
public static final int	VID_MAPPING_FILE_FIELD_NUMBER	5

com.intel.genomicsdb.GenomicsDBImportConfiguration.Partition

Modifier and Type	Constant Field	Value
public static final int	ARRAY_FIELD_NUMBER	3
public static final int	BEGIN_FIELD_NUMBER	1
public static final int	END_FIELD_NUMBER	5
private static final long	serialVersionUID	0L
public static final int	VCF_OUTPUT_FILENAME_FIELD_NUMBER	4
public static final int	WORKSPACE_FIELD_NUMBER	2

com.intel.genomicsdb.GenomicsDBImporter

Modifier and Type	Constant Field	Value
private final String	DEFAULT_ARRAYNAME	"genomicsdb_array"
private final long	DEFAULT_SIZE_PER_COLUMN_PARTITION	10240L
private final int	DEFAULT_TILEDB_CELLS_PER_TILE	1000
private static final String	mTempLoaderJSONFileName	".tmp_loader.json"

com.intel.genomicsdb.GenomicsDBUtils

Modifier and Type	Constant Field	Value
private static final String	mGenomicsDBLibraryName	"tiledbgenomicsdb"

com.intel.genomicsdb.GenomicsDBVidMapProto.Chromosome

Modifier and Type	Constant Field	Value
public static final int	LENGTH_FIELD_NUMBER	2
public static final int	NAME_FIELD_NUMBER	1
private static final long	serialVersionUID	0L
public static final int	TILEDB_COLUMN_OFFSET_FIELD_NUMBER	3

com.intel.genomicsdb.GenomicsDBVidMapProto.InfoField

Modifier and Type	Constant Field	Value
public static final int	LENGTH_FIELD_NUMBER	4
public static final int	NAME_FIELD_NUMBER	1
private static final long	serialVersionUID	0L
public static final int	TYPE_FIELD_NUMBER	2
public static final int	VCF_FIELD_CLASS_FIELD_NUMBER	3

com.intel.genomicsdb.GenomicsDBVidMapProto.VidMappingPB

Modifier and Type	Constant Field	Value
public static final int	CHROMOSOMES_FIELD_NUMBER	2
public static final int	INFOFIELDS_FIELD_NUMBER	1
private static final long	serialVersionUID	0L