Hierarchy For All Packages

Package Hierarchies:

• com.intel.genomicsdb

Class Hierarchy

• java.lang.Object
  • com.google.protobuf.AbstractMessageLite (implements com.google.protobuf.MessageLite)
    • com.google.protobuf.AbstractMessage (implements com.google.protobuf.Message)
      • com.google.protobuf.GeneratedMessage (implements java.io.Serializable)
        • com.intel.genomicsdb.GenomicsDBCallsetsMapProto.CallsetMappingPB (implements com.intel.genomicsdb.GenomicsDBCallsetsMapProto.CallsetMappingPBOrBuilder)
        • com.intel.genomicsdb.GenomicsDBCallsetsMapProto.SampleIDToTileDBIDMap (implements com.intel.genomicsdb.GenomicsDBCallsetsMapProto.SampleIDToTileDBIDMapOrBuilder)
        • com.intel.genomicsdb.GenomicsDBExportConfiguration.ColumnRange (implements com.intel.genomicsdb.GenomicsDBExportConfiguration.ColumnRangeOrBuilder)
        • com.intel.genomicsdb.GenomicsDBExportConfiguration.ColumnRangeList (implements com.intel.genomicsdb.GenomicsDBExportConfiguration.ColumnRangeListOrBuilder)
        • com.intel.genomicsdb.GenomicsDBExportConfiguration.ExportConfiguration (implements com.intel.genomicsdb.GenomicsDBExportConfiguration.ExportConfigurationOrBuilder)
        • com.intel.genomicsdb.GenomicsDBImportConfiguration.ImportConfiguration (implements com.intel.genomicsdb.GenomicsDBImportConfiguration.ImportConfigurationOrBuilder)
        • com.intel.genomicsdb.GenomicsDBImportConfiguration.Partition (implements com.intel.genomicsdb.GenomicsDBImportConfiguration.PartitionOrBuilder)
        • com.intel.genomicsdb.GenomicsDBVidMapProto.Chromosome (implements com.intel.genomicsdb.GenomicsDBVidMapProto.ChromosomeOrBuilder)
        • com.intel.genomicsdb.GenomicsDBVidMapProto.InfoField (implements com.intel.genomicsdb.GenomicsDBVidMapProto.InfoFieldOrBuilder)
        • com.intel.genomicsdb.GenomicsDBVidMapProto.VidMappingPB (implements com.intel.genomicsdb.GenomicsDBVidMapProto.VidMappingPBOrBuilder)
  • com.google.protobuf.AbstractMessageLite.Builder<BuilderType> (implements com.google.protobuf.MessageLite.Builder)
    • com.google.protobuf.AbstractMessage.Builder<BuilderType> (implements com.google.protobuf.Message.Builder)
      • com.google.protobuf.GeneratedMessage.Builder<BuilderType>
        • com.intel.genomicsdb.GenomicsDBCallsetsMapProto.CallsetMappingPB.Builder (implements com.intel.genomicsdb.GenomicsDBCallsetsMapProto.CallsetMappingPBOrBuilder)
        • com.intel.genomicsdb.GenomicsDBCallsetsMapProto.SampleIDToTileDBIDMap.Builder (implements com.intel.genomicsdb.GenomicsDBCallsetsMapProto.SampleIDToTileDBIDMapOrBuilder)
        • com.intel.genomicsdb.GenomicsDBExportConfiguration.ColumnRange.Builder (implements com.intel.genomicsdb.GenomicsDBExportConfiguration.ColumnRangeOrBuilder)
        • com.intel.genomicsdb.GenomicsDBExportConfiguration.ColumnRangeList.Builder (implements com.intel.genomicsdb.GenomicsDBExportConfiguration.ColumnRangeListOrBuilder)
        • com.intel.genomicsdb.GenomicsDBExportConfiguration.ExportConfiguration.Builder (implements com.intel.genomicsdb.GenomicsDBExportConfiguration.ExportConfigurationOrBuilder)
        • com.intel.genomicsdb.GenomicsDBImportConfiguration.ImportConfiguration.Builder (implements com.intel.genomicsdb.GenomicsDBImportConfiguration.ImportConfigurationOrBuilder)
        • com.intel.genomicsdb.GenomicsDBImportConfiguration.Partition.Builder (implements com.intel.genomicsdb.GenomicsDBImportConfiguration.PartitionOrBuilder)
        • com.intel.genomicsdb.GenomicsDBVidMapProto.Chromosome.Builder (implements com.intel.genomicsdb.GenomicsDBVidMapProto.ChromosomeOrBuilder)
        • com.intel.genomicsdb.GenomicsDBVidMapProto.InfoField.Builder (implements com.intel.genomicsdb.GenomicsDBVidMapProto.InfoFieldOrBuilder)
        • com.intel.genomicsdb.GenomicsDBVidMapProto.VidMappingPB.Builder (implements com.intel.genomicsdb.GenomicsDBVidMapProto.VidMappingPBOrBuilder)
  • com.intel.genomicsdb.ChromosomeInterval
  • org.apache.hadoop.conf.Configuration (implements java.lang.Iterable<T>, org.apache.hadoop.io.Writable)
    • com.intel.genomicsdb.GenomicsDBConfiguration (implements java.io.Serializable)
  • com.intel.genomicsdb.GenomicsDBCallsetsMapProto
  • com.intel.genomicsdb.GenomicsDBCallsetsMapProto.CallsetMappingPB.CallsetMapDefaultEntryHolder
  • com.intel.genomicsdb.GenomicsDBExportConfiguration
  • com.intel.genomicsdb.GenomicsDBFeatureReader<T,SOURCE> (implements htsjdk.tribble.FeatureReader<T>)
  • com.intel.genomicsdb.GenomicsDBFeatureReader.GenomicsDBFeatureIterator (implements htsjdk.tribble.CloseableTribbleIterator<T>)
  • com.intel.genomicsdb.GenomicsDBImportConfiguration
  • com.intel.genomicsdb.GenomicsDBImporter
  • com.intel.genomicsdb.GenomicsDBImporterStreamWrapper
  • com.intel.genomicsdb.GenomicsDBJavaSparkFactory
  • com.intel.genomicsdb.GenomicsDBPartitionInfo (implements java.io.Serializable)
  • com.intel.genomicsdb.GenomicsDBTimer
  • com.intel.genomicsdb.GenomicsDBUtils
  • com.intel.genomicsdb.GenomicsDBVidMapProto
  • org.apache.hadoop.mapreduce.InputFormat<K,V>
    • com.intel.genomicsdb.GenomicsDBInputFormat<VCONTEXT,SOURCE> (implements org.apache.hadoop.conf.Configurable)
  • org.apache.hadoop.mapreduce.InputSplit
    • com.intel.genomicsdb.GenomicsDBInputSplit (implements org.apache.hadoop.io.Writable)
  • java.io.InputStream (implements java.io.Closeable)
    • com.intel.genomicsdb.GenomicsDBQueryStream
  • com.intel.genomicsdb.MultiChromosomeIterator<SOURCE> (implements java.util.Iterator<E>)
  • java.io.OutputStream (implements java.io.Closeable, java.io.Flushable)
    • com.intel.genomicsdb.SilentByteBufferStream
  • org.apache.hadoop.mapreduce.RecordReader<KEYIN,VALUEIN> (implements java.io.Closeable)
    • com.intel.genomicsdb.GenomicsDBRecordReader<VCONTEXT,SOURCE>
  • com.intel.genomicsdb.SampleInfo
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.lang.RuntimeException
        • com.intel.genomicsdb.GenomicsDBException

Interface Hierarchy

• com.google.protobuf.MessageLiteOrBuilder
  • com.intel.genomicsdb.GenomicsDBCallsetsMapProto.CallsetMappingPBOrBuilder
  • com.intel.genomicsdb.GenomicsDBCallsetsMapProto.SampleIDToTileDBIDMapOrBuilder
  • com.intel.genomicsdb.GenomicsDBExportConfiguration.ColumnRangeListOrBuilder
  • com.intel.genomicsdb.GenomicsDBExportConfiguration.ColumnRangeOrBuilder
  • com.intel.genomicsdb.GenomicsDBExportConfiguration.ExportConfigurationOrBuilder
  • com.intel.genomicsdb.GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
  • com.intel.genomicsdb.GenomicsDBImportConfiguration.PartitionOrBuilder
  • com.intel.genomicsdb.GenomicsDBVidMapProto.ChromosomeOrBuilder
  • com.intel.genomicsdb.GenomicsDBVidMapProto.InfoFieldOrBuilder
  • com.intel.genomicsdb.GenomicsDBVidMapProto.VidMappingPBOrBuilder
  • com.google.protobuf.MessageOrBuilder
    • com.intel.genomicsdb.GenomicsDBCallsetsMapProto.CallsetMappingPBOrBuilder
    • com.intel.genomicsdb.GenomicsDBCallsetsMapProto.SampleIDToTileDBIDMapOrBuilder
    • com.intel.genomicsdb.GenomicsDBExportConfiguration.ColumnRangeListOrBuilder
    • com.intel.genomicsdb.GenomicsDBExportConfiguration.ColumnRangeOrBuilder
    • com.intel.genomicsdb.GenomicsDBExportConfiguration.ExportConfigurationOrBuilder
    • com.intel.genomicsdb.GenomicsDBImportConfiguration.ImportConfigurationOrBuilder
    • com.intel.genomicsdb.GenomicsDBImportConfiguration.PartitionOrBuilder
    • com.intel.genomicsdb.GenomicsDBVidMapProto.ChromosomeOrBuilder
    • com.intel.genomicsdb.GenomicsDBVidMapProto.InfoFieldOrBuilder
    • com.intel.genomicsdb.GenomicsDBVidMapProto.VidMappingPBOrBuilder