Serialized Form (com.intel:genomicsdb-gatk4 0.4.0 API)

Package com.intel.genomicsdb
- Class com.intel.genomicsdb.GenomicsDBCallsetsMapProto.CallsetMappingPB extends com.google.protobuf.GeneratedMessage implements Serializable
  
  serialVersionUID:
  
  0L
  - Serialized Fields
    - callsetMap_
```
com.google.protobuf.MapField<K,V> callsetMap_
```
    - memoizedIsInitialized
```
byte memoizedIsInitialized
```
- Class com.intel.genomicsdb.GenomicsDBCallsetsMapProto.SampleIDToTileDBIDMap extends com.google.protobuf.GeneratedMessage implements Serializable
  
  serialVersionUID:
  
  0L
  - Serialized Fields
    - bitField0_
```
int bitField0_
```
    - sampleName_
```
Object sampleName_
```
    - tiledbRowIndex_
```
long tiledbRowIndex_
```
    - idxInFile_
```
int idxInFile_
```
    - streamName_
```
Object streamName_
```
    - memoizedIsInitialized
```
byte memoizedIsInitialized
```
- Class com.intel.genomicsdb.GenomicsDBConfiguration extends org.apache.hadoop.conf.Configuration implements Serializable
  - Serialized Fields
    - produceCombinedVCF
```
Boolean produceCombinedVCF
```
    - produceTileDBArray
```
Boolean produceTileDBArray
```
    - segmentSize
```
Integer segmentSize
```
    - nCellsPerTile
```
Integer nCellsPerTile
```
    - partitionInfoList
```
LinkedList<E> partitionInfoList
```
    - hosts
```
ArrayList<E> hosts
```
- Class com.intel.genomicsdb.GenomicsDBException extends RuntimeException implements Serializable
- Class com.intel.genomicsdb.GenomicsDBExportConfiguration.ColumnRange extends com.google.protobuf.GeneratedMessage implements Serializable
  
  serialVersionUID:
  
  0L
  - Serialized Fields
    - bitField0_
```
int bitField0_
```
    - low_
```
long low_
```
    - high_
```
long high_
```
    - memoizedIsInitialized
```
byte memoizedIsInitialized
```
- Class com.intel.genomicsdb.GenomicsDBExportConfiguration.ColumnRangeList extends com.google.protobuf.GeneratedMessage implements Serializable
  
  serialVersionUID:
  
  0L
  - Serialized Fields
    - rangeList_
```
List<E> rangeList_
```
    - memoizedIsInitialized
```
byte memoizedIsInitialized
```
- Class com.intel.genomicsdb.GenomicsDBExportConfiguration.ExportConfiguration extends com.google.protobuf.GeneratedMessage implements Serializable
  
  serialVersionUID:
  
  0L
  - Serialized Fields
    - bitField0_
```
int bitField0_
```
    - tiledbWorkspace_
```
Object tiledbWorkspace_
```
    - tiledbArrayName_
```
Object tiledbArrayName_
```
    - referenceGenome_
```
Object referenceGenome_
```
    - queryColumnRanges_
```
List<E> queryColumnRanges_
```
    - attributes_
```
com.google.protobuf.LazyStringList attributes_
```
    - memoizedIsInitialized
```
byte memoizedIsInitialized
```
- Class com.intel.genomicsdb.GenomicsDBImportConfiguration.ImportConfiguration extends com.google.protobuf.GeneratedMessage implements Serializable
  
  serialVersionUID:
  
  0L
  - Serialized Fields
    - bitField0_
```
int bitField0_
```
    - sizePerColumnPartition_
```
long sizePerColumnPartition_
```
    - rowBasedPartitioning_
```
boolean rowBasedPartitioning_
```
    - produceCombinedVcf_
```
boolean produceCombinedVcf_
```
    - produceTiledbArray_
```
boolean produceTiledbArray_
```
    - columnPartitions_
```
List<E> columnPartitions_
```
    - vidMappingFile_
```
Object vidMappingFile_
```
    - callsetMappingFile_
```
Object callsetMappingFile_
```
    - treatDeletionsAsIntervals_
```
boolean treatDeletionsAsIntervals_
```
    - numParallelVcfFiles_
```
int numParallelVcfFiles_
```
    - deleteAndCreateTiledbArray_
```
boolean deleteAndCreateTiledbArray_
```
    - doPingPongBuffering_
```
boolean doPingPongBuffering_
```
    - offloadVcfOutputProcessing_
```
boolean offloadVcfOutputProcessing_
```
    - discardVcfIndex_
```
boolean discardVcfIndex_
```
    - segmentSize_
```
long segmentSize_
```
    - compressTiledbArray_
```
boolean compressTiledbArray_
```
    - numCellsPerTile_
```
long numCellsPerTile_
```
    - memoizedIsInitialized
```
byte memoizedIsInitialized
```
- Class com.intel.genomicsdb.GenomicsDBImportConfiguration.Partition extends com.google.protobuf.GeneratedMessage implements Serializable
  
  serialVersionUID:
  
  0L
  - Serialized Fields
    - bitField0_
```
int bitField0_
```
    - begin_
```
long begin_
```
    - workspace_
```
Object workspace_
```
    - array_
```
Object array_
```
    - vcfOutputFilename_
```
Object vcfOutputFilename_
```
    - end_
```
long end_
```
    - memoizedIsInitialized
```
byte memoizedIsInitialized
```
- Class com.intel.genomicsdb.GenomicsDBVidMapProto.Chromosome extends com.google.protobuf.GeneratedMessage implements Serializable
  
  serialVersionUID:
  
  0L
  - Serialized Fields
    - bitField0_
```
int bitField0_
```
    - name_
```
Object name_
```
    - length_
```
long length_
```
    - tiledbColumnOffset_
```
long tiledbColumnOffset_
```
    - memoizedIsInitialized
```
byte memoizedIsInitialized
```
- Class com.intel.genomicsdb.GenomicsDBVidMapProto.InfoField extends com.google.protobuf.GeneratedMessage implements Serializable
  
  serialVersionUID:
  
  0L
  - Serialized Fields
    - bitField0_
```
int bitField0_
```
    - name_
```
Object name_
```
    - type_
```
Object type_
```
    - vcfFieldClass_
```
com.google.protobuf.LazyStringList vcfFieldClass_
```
    - length_
```
Object length_
```
    - memoizedIsInitialized
```
byte memoizedIsInitialized
```
- Class com.intel.genomicsdb.GenomicsDBVidMapProto.VidMappingPB extends com.google.protobuf.GeneratedMessage implements Serializable
  
  serialVersionUID:
  
  0L
  - Serialized Fields
    - infofields_
```
List<E> infofields_
```
    - chromosomes_
```
List<E> chromosomes_
```
    - memoizedIsInitialized
```
byte memoizedIsInitialized
```

Serialized Form

Package com.intel.genomicsdb

Class com.intel.genomicsdb.GenomicsDBCallsetsMapProto.CallsetMappingPB extends com.google.protobuf.GeneratedMessage implements Serializable

Serialized Fields

callsetMap_

memoizedIsInitialized

Class com.intel.genomicsdb.GenomicsDBCallsetsMapProto.SampleIDToTileDBIDMap extends com.google.protobuf.GeneratedMessage implements Serializable

Serialized Fields

bitField0_

sampleName_

tiledbRowIndex_

idxInFile_

streamName_

memoizedIsInitialized

Class com.intel.genomicsdb.GenomicsDBConfiguration extends org.apache.hadoop.conf.Configuration implements Serializable

Serialized Fields

produceCombinedVCF

produceTileDBArray

segmentSize

nCellsPerTile

partitionInfoList

hosts

Class com.intel.genomicsdb.GenomicsDBException extends RuntimeException implements Serializable

Class com.intel.genomicsdb.GenomicsDBExportConfiguration.ColumnRange extends com.google.protobuf.GeneratedMessage implements Serializable

Serialized Fields

bitField0_

low_

high_

memoizedIsInitialized

Class com.intel.genomicsdb.GenomicsDBExportConfiguration.ColumnRangeList extends com.google.protobuf.GeneratedMessage implements Serializable

Serialized Fields

rangeList_

memoizedIsInitialized

Class com.intel.genomicsdb.GenomicsDBExportConfiguration.ExportConfiguration extends com.google.protobuf.GeneratedMessage implements Serializable

Serialized Fields

bitField0_

tiledbWorkspace_

tiledbArrayName_

referenceGenome_

queryColumnRanges_

attributes_

memoizedIsInitialized

Class com.intel.genomicsdb.GenomicsDBImportConfiguration.ImportConfiguration extends com.google.protobuf.GeneratedMessage implements Serializable

Serialized Fields

bitField0_

sizePerColumnPartition_

rowBasedPartitioning_

produceCombinedVcf_

produceTiledbArray_

columnPartitions_

vidMappingFile_

callsetMappingFile_

treatDeletionsAsIntervals_

numParallelVcfFiles_

deleteAndCreateTiledbArray_

doPingPongBuffering_

offloadVcfOutputProcessing_

discardVcfIndex_

segmentSize_

compressTiledbArray_

numCellsPerTile_

memoizedIsInitialized

Class com.intel.genomicsdb.GenomicsDBImportConfiguration.Partition extends com.google.protobuf.GeneratedMessage implements Serializable

Serialized Fields

bitField0_

begin_

workspace_

array_

vcfOutputFilename_

end_

memoizedIsInitialized

Class com.intel.genomicsdb.GenomicsDBVidMapProto.Chromosome extends com.google.protobuf.GeneratedMessage implements Serializable

Serialized Fields

bitField0_

name_

length_

tiledbColumnOffset_

memoizedIsInitialized

Class com.intel.genomicsdb.GenomicsDBVidMapProto.InfoField extends com.google.protobuf.GeneratedMessage implements Serializable

Serialized Fields