com.milaboratory.core.alignment

Class MultiAlignmentHelper.Settings

java.lang.Object

com.milaboratory.core.alignment.MultiAlignmentHelper.Settings

Enclosing class:

MultiAlignmentHelper

public static class MultiAlignmentHelper.Settings
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
boolean	lowerCaseMatch
boolean	lowerCaseMismatch
boolean	markMatchWithSpecialLetter
char	matchChar
char	outOfRangeChar

Constructor Summary

Constructors

Constructor and Description
MultiAlignmentHelper.Settings(boolean markMatchWithSpecialLetter, boolean lowerCaseMatch, boolean lowerCaseMismatch, char matchChar, char outOfRangeChar)

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

markMatchWithSpecialLetter

public final boolean markMatchWithSpecialLetter

lowerCaseMatch

public final boolean lowerCaseMatch

lowerCaseMismatch

public final boolean lowerCaseMismatch

matchChar

public final char matchChar

outOfRangeChar

public final char outOfRangeChar

Constructor Detail

MultiAlignmentHelper.Settings

public MultiAlignmentHelper.Settings(boolean markMatchWithSpecialLetter,
                             boolean lowerCaseMatch,
                             boolean lowerCaseMismatch,
                             char matchChar,
                             char outOfRangeChar)