com.milaboratory.core.alignment.batch

Interface AlignmentHit<S extends Sequence<S>,P>

Type Parameters:

S - sequence type

P - type of record payload, used to identify particular sequence from base that query was aligned with

All Known Implementing Classes:

AABlastHit, AABlastHitExt, AlignmentHitImpl, BlastHit, BlastHitExt, KAlignmentHit, KAlignmentHit2, NBlastHit, NBlastHitExt

public interface AlignmentHit<S extends Sequence<S>,P>

Method Summary

Methods

Modifier and Type	Method and Description
Alignment<S>	getAlignment()
P	getRecordPayload()

Method Detail

getAlignment

Alignment<S> getAlignment()

getRecordPayload

P getRecordPayload()