com.milaboratory.core.alignment.batch

Interface BatchAlignerWithBase<S extends Sequence<S>,P,H extends AlignmentHit<S,P>>

Type Parameters:

S - type of sequence

P - type of record payload, used to store additional information along with sequence to simplify it's subsequent identification in result (e.g. Integer to just index sequences.

H - hit class

All Superinterfaces:

BatchAligner<S,H>, WithBase<S,P>

All Known Subinterfaces:

BatchAlignerWithBaseWithFilter<S,P,H>

All Known Implementing Classes:

KAligner, KAligner2, SimpleBatchAligner

public interface BatchAlignerWithBase<S extends Sequence<S>,P,H extends AlignmentHit<S,P>>
extends BatchAligner<S,H>, WithBase<S,P>

BatchAligner with self-managed database (user can directly add subject sequences before running alignment).

Method Summary

Methods inherited from interface com.milaboratory.core.alignment.batch.BatchAligner

align, align

Methods inherited from interface com.milaboratory.core.alignment.batch.WithBase

addReference