com.milaboratory.core.alignment.batch

Interface BatchAlignerWithBaseParameters

All Known Subinterfaces:

AbstractKAlignerParameters

All Known Implementing Classes:

KAlignerParameters, KAlignerParameters2

public interface BatchAlignerWithBaseParameters

Author:

Dmitry Bolotin, Stanislav Poslavsky

Method Summary

Methods

Modifier and Type	Method and Description
BatchAlignerWithBaseParameters	clone()
<P> BatchAlignerWithBaseWithFilter<NucleotideSequence,P,? extends AlignmentHit<NucleotideSequence,P>>	createAligner()
AlignmentScoring<NucleotideSequence>	getScoring()

Method Detail

createAligner

<P> BatchAlignerWithBaseWithFilter<NucleotideSequence,P,? extends AlignmentHit<NucleotideSequence,P>> createAligner()

getScoring

AlignmentScoring<NucleotideSequence> getScoring()

clone

BatchAlignerWithBaseParameters clone()