com.milaboratory.core.alignment.batch

Interface PipedBatchAlignerWithBase<S extends Sequence<S>,P,H extends AlignmentHit<? extends S,? extends P>>

Type Parameters:

S - type of sequence

P - type of record payload, used to store additional information along with sequence to simplify it's subsequent identification in result (e.g. Integer to just index sequences.

H - hit class

All Superinterfaces:

PipedBatchAligner<S,H>, WithBase<S,P>

All Known Implementing Classes:

AABlastAligner, BlastAligner, BlastAlignerAbstract, KAligner, NBlastAligner

public interface PipedBatchAlignerWithBase<S extends Sequence<S>,P,H extends AlignmentHit<? extends S,? extends P>>
extends PipedBatchAligner<S,H>, WithBase<S,P>

PipedBatchAligner with self-managed database (user can directly add subject sequences before running alignment).

Method Summary

Methods inherited from interface com.milaboratory.core.alignment.batch.PipedBatchAligner

align, align

Methods inherited from interface com.milaboratory.core.alignment.batch.WithBase

addReference