Uses of Interface
com.milaboratory.core.alignment.batch.AlignmentResult

Packages that use AlignmentResult

Package	Description
com.milaboratory.core.alignment.batch
com.milaboratory.core.alignment.kaligner1
com.milaboratory.core.alignment.kaligner2

Uses of AlignmentResult in com.milaboratory.core.alignment.batch

Subinterfaces of AlignmentResult in com.milaboratory.core.alignment.batch

Modifier and Type	Interface and Description
interface	PipedAlignmentResult<H extends AlignmentHit<?,?>,Q>

Classes in com.milaboratory.core.alignment.batch that implement AlignmentResult

Modifier and Type	Class and Description
class	AlignmentResultImpl<H extends AlignmentHit<?,?>>
class	PipedAlignmentResultImpl<H extends AlignmentHit<?,?>,Q>

Methods in com.milaboratory.core.alignment.batch that return AlignmentResult

Modifier and Type	Method and Description
AlignmentResult<AlignmentHit<S,P>>	SimpleBatchAligner.align(S sequence)
AlignmentResult<H>	BatchAligner.align(S sequence)
abstract AlignmentResult<H>	AbstractBatchAligner.align(S sequence)
AlignmentResult<AlignmentHit<S,P>>	SimpleBatchAligner.align(S sequence, int from, int to)
AlignmentResult<H>	BatchAligner.align(S sequence, int from, int to)
AlignmentResult<H>	BatchAlignerWithBaseWithFilter.align(S sequence, int from, int to, BitArray filter)

Uses of AlignmentResult in com.milaboratory.core.alignment.kaligner1

Classes in com.milaboratory.core.alignment.kaligner1 that implement AlignmentResult

Modifier and Type	Class and Description
class	KAlignmentResult<P> KAlignmentResult - class which is result of KAligner.align(com.milaboratory.core.sequence.NucleotideSequence), KAligner.align(com.milaboratory.core.sequence.NucleotideSequence, int, int), KAligner#align(com.milaboratory.core.sequence.NucleotideSequence, int, int, boolean) methods.
class	KAlignmentResultP<P,Q> Piped version of KAlignmentResult.

Methods in com.milaboratory.core.alignment.kaligner1 that return AlignmentResult

Modifier and Type	Method and Description
AlignmentResult<KAlignmentHit<P>>	KAligner.align(NucleotideSequence sequence, int from, int to, BitArray filter)

Uses of AlignmentResult in com.milaboratory.core.alignment.kaligner2

Classes in com.milaboratory.core.alignment.kaligner2 that implement AlignmentResult

Modifier and Type	Class and Description
class	KAlignmentResult2<P> Created by dbolotin on 26/10/15.