| Package | Description |
|---|---|
| com.milaboratory.core.alignment.batch | |
| com.milaboratory.core.alignment.kaligner1 | |
| com.milaboratory.core.alignment.kaligner2 |
| Modifier and Type | Interface and Description |
|---|---|
interface |
PipedAlignmentResult<H extends AlignmentHit<?,?>,Q> |
| Modifier and Type | Class and Description |
|---|---|
class |
AlignmentResultImpl<H extends AlignmentHit<?,?>> |
class |
PipedAlignmentResultImpl<H extends AlignmentHit<?,?>,Q> |
| Modifier and Type | Method and Description |
|---|---|
AlignmentResult<AlignmentHit<S,P>> |
SimpleBatchAligner.align(S sequence) |
AlignmentResult<H> |
BatchAligner.align(S sequence) |
abstract AlignmentResult<H> |
AbstractBatchAligner.align(S sequence) |
AlignmentResult<AlignmentHit<S,P>> |
SimpleBatchAligner.align(S sequence,
int from,
int to) |
AlignmentResult<H> |
BatchAligner.align(S sequence,
int from,
int to) |
AlignmentResult<H> |
BatchAlignerWithBaseWithFilter.align(S sequence,
int from,
int to,
BitArray filter) |
| Modifier and Type | Class and Description |
|---|---|
class |
KAlignmentResult<P>
KAlignmentResult - class which is result of
KAligner.align(com.milaboratory.core.sequence.NucleotideSequence),
KAligner.align(com.milaboratory.core.sequence.NucleotideSequence,
int, int), KAligner#align(com.milaboratory.core.sequence.NucleotideSequence,
int, int, boolean) methods. |
class |
KAlignmentResultP<P,Q>
Piped version of
KAlignmentResult. |
| Modifier and Type | Method and Description |
|---|---|
AlignmentResult<KAlignmentHit<P>> |
KAligner.align(NucleotideSequence sequence,
int from,
int to,
BitArray filter) |
| Modifier and Type | Class and Description |
|---|---|
class |
KAlignmentResult2<P>
Created by dbolotin on 26/10/15.
|
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