Uses of Interface
com.milaboratory.core.alignment.batch.BatchAligner

Packages that use BatchAligner

Package	Description
com.milaboratory.core.alignment.batch
com.milaboratory.core.alignment.kaligner1
com.milaboratory.core.alignment.kaligner2

Uses of BatchAligner in com.milaboratory.core.alignment.batch

Subinterfaces of BatchAligner in com.milaboratory.core.alignment.batch

Modifier and Type	Interface and Description
interface	BatchAlignerWithBase<S extends Sequence<S>,P,H extends AlignmentHit<S,P>> BatchAligner with self-managed database (user can directly add subject sequences before running alignment).
interface	BatchAlignerWithBaseWithFilter<S extends Sequence<S>,P,H extends AlignmentHit<S,P>>

Classes in com.milaboratory.core.alignment.batch that implement BatchAligner

Modifier and Type	Class and Description
class	AbstractBatchAligner<S extends Sequence<S>,H extends AlignmentHit<S,?>>
class	SimpleBatchAligner<S extends Sequence<S>,P> Simplest implementation of BatchAligner, which aligns target sequence with all subjects using classical (low performance) alignment algorithms.

Uses of BatchAligner in com.milaboratory.core.alignment.kaligner1

Classes in com.milaboratory.core.alignment.kaligner1 that implement BatchAligner

Modifier and Type	Class and Description
class	KAligner<P> KAligner is a comprehensive aligner for nucleotide sequences.

Uses of BatchAligner in com.milaboratory.core.alignment.kaligner2

Classes in com.milaboratory.core.alignment.kaligner2 that implement BatchAligner

Modifier and Type	Class and Description
class	KAligner2<P>