Uses of Interface
com.milaboratory.core.alignment.batch.BatchAlignerWithBase

Packages that use BatchAlignerWithBase

Package	Description
com.milaboratory.core.alignment.batch
com.milaboratory.core.alignment.kaligner1
com.milaboratory.core.alignment.kaligner2

Uses of BatchAlignerWithBase in com.milaboratory.core.alignment.batch

Subinterfaces of BatchAlignerWithBase in com.milaboratory.core.alignment.batch

Modifier and Type	Interface and Description
interface	BatchAlignerWithBaseWithFilter<S extends Sequence<S>,P,H extends AlignmentHit<S,P>>

Classes in com.milaboratory.core.alignment.batch that implement BatchAlignerWithBase

Modifier and Type	Class and Description
class	SimpleBatchAligner<S extends Sequence<S>,P> Simplest implementation of BatchAligner, which aligns target sequence with all subjects using classical (low performance) alignment algorithms.

Uses of BatchAlignerWithBase in com.milaboratory.core.alignment.kaligner1

Classes in com.milaboratory.core.alignment.kaligner1 that implement BatchAlignerWithBase

Modifier and Type	Class and Description
class	KAligner<P> KAligner is a comprehensive aligner for nucleotide sequences.

Uses of BatchAlignerWithBase in com.milaboratory.core.alignment.kaligner2

Classes in com.milaboratory.core.alignment.kaligner2 that implement BatchAlignerWithBase

Modifier and Type	Class and Description
class	KAligner2<P>