Uses of Interface
com.milaboratory.core.alignment.batch.HasSequence

Packages that use HasSequence

Package	Description
com.milaboratory.core.alignment.batch
com.milaboratory.core.alignment.blast
com.milaboratory.core.alignment.kaligner1
com.milaboratory.core.sequence

Uses of HasSequence in com.milaboratory.core.alignment.batch

Methods in com.milaboratory.core.alignment.batch with type parameters of type HasSequence

Modifier and Type	Method and Description
<Q extends HasSequence<S>> cc.redberry.pipe.OutputPort<? extends PipedAlignmentResult<H,Q>>	PipedBatchAligner.align(cc.redberry.pipe.OutputPort<Q> input) Starts processing of input sequences and returns pipe of results.
<Q extends HasSequence<S>> cc.redberry.pipe.OutputPort<PipedAlignmentResult<H,Q>>	AbstractBatchAligner.align(cc.redberry.pipe.OutputPort<Q> input)

Uses of HasSequence in com.milaboratory.core.alignment.blast

Methods in com.milaboratory.core.alignment.blast with type parameters of type HasSequence

Modifier and Type	Method and Description
<Q extends HasSequence<S>> cc.redberry.pipe.OutputPort<PipedAlignmentResult<H,Q>>	BlastAlignerExtAbstract.align(cc.redberry.pipe.OutputPort<Q> input)
<Q extends HasSequence<S>> cc.redberry.pipe.OutputPort<PipedAlignmentResult<H,Q>>	BlastAlignerAbstract.align(cc.redberry.pipe.OutputPort<Q> input)

Uses of HasSequence in com.milaboratory.core.alignment.kaligner1

Methods in com.milaboratory.core.alignment.kaligner1 with type parameters of type HasSequence

Modifier and Type	Method and Description
<Q extends HasSequence<NucleotideSequence>> cc.redberry.pipe.OutputPort<KAlignmentResultP<P,Q>>	KAligner.align(cc.redberry.pipe.OutputPort<Q> input)

Uses of HasSequence in com.milaboratory.core.sequence

Classes in com.milaboratory.core.sequence that implement HasSequence

Modifier and Type	Class and Description
class	AminoAcidSequence Representation of amino acid sequences.
class	NucleotideSequence Representation of nucleotide sequence.
class	Sequence<S extends Sequence<S>> Parent class for all types of sequences.