| Package | Description |
|---|---|
| com.milaboratory.core.alignment.batch | |
| com.milaboratory.core.alignment.blast | |
| com.milaboratory.core.alignment.kaligner1 | |
| com.milaboratory.core.sequence |
| Modifier and Type | Method and Description |
|---|---|
<Q extends HasSequence<S>> |
PipedBatchAligner.align(cc.redberry.pipe.OutputPort<Q> input)
Starts processing of input sequences and returns pipe of results.
|
<Q extends HasSequence<S>> |
AbstractBatchAligner.align(cc.redberry.pipe.OutputPort<Q> input) |
| Modifier and Type | Method and Description |
|---|---|
<Q extends HasSequence<S>> |
BlastAlignerExtAbstract.align(cc.redberry.pipe.OutputPort<Q> input) |
<Q extends HasSequence<S>> |
BlastAlignerAbstract.align(cc.redberry.pipe.OutputPort<Q> input) |
| Modifier and Type | Method and Description |
|---|---|
<Q extends HasSequence<NucleotideSequence>> |
KAligner.align(cc.redberry.pipe.OutputPort<Q> input) |
| Modifier and Type | Class and Description |
|---|---|
class |
AminoAcidSequence
Representation of amino acid sequences.
|
class |
NucleotideSequence
Representation of nucleotide sequence.
|
class |
Sequence<S extends Sequence<S>>
Parent class for all types of sequences.
|
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