Uses of Interface
com.milaboratory.core.alignment.batch.PipedAlignmentResult

Packages that use PipedAlignmentResult

Package	Description
com.milaboratory.core.alignment.batch
com.milaboratory.core.alignment.blast
com.milaboratory.core.alignment.kaligner1

Uses of PipedAlignmentResult in com.milaboratory.core.alignment.batch

Classes in com.milaboratory.core.alignment.batch that implement PipedAlignmentResult

Modifier and Type	Class and Description
class	PipedAlignmentResultImpl<H extends AlignmentHit<?,?>,Q>

Methods in com.milaboratory.core.alignment.batch that return types with arguments of type PipedAlignmentResult

Modifier and Type	Method and Description
<Q extends HasSequence<S>> cc.redberry.pipe.OutputPort<? extends PipedAlignmentResult<H,Q>>	PipedBatchAligner.align(cc.redberry.pipe.OutputPort<Q> input) Starts processing of input sequences and returns pipe of results.
<Q extends HasSequence<S>> cc.redberry.pipe.OutputPort<PipedAlignmentResult<H,Q>>	AbstractBatchAligner.align(cc.redberry.pipe.OutputPort<Q> input)
<Q> cc.redberry.pipe.OutputPort<? extends PipedAlignmentResult<H,Q>>	PipedBatchAligner.align(cc.redberry.pipe.OutputPort<Q> input, SequenceExtractor<Q,S> extractor) Starts processing of input sequences and returns pipe of results.
<Q> cc.redberry.pipe.OutputPort<PipedAlignmentResult<H,Q>>	AbstractBatchAligner.align(cc.redberry.pipe.OutputPort<Q> input, SequenceExtractor<Q,S> extractor)

Uses of PipedAlignmentResult in com.milaboratory.core.alignment.blast

Methods in com.milaboratory.core.alignment.blast that return types with arguments of type PipedAlignmentResult

Modifier and Type	Method and Description
<Q extends HasSequence<S>> cc.redberry.pipe.OutputPort<PipedAlignmentResult<H,Q>>	BlastAlignerExtAbstract.align(cc.redberry.pipe.OutputPort<Q> input)
<Q extends HasSequence<S>> cc.redberry.pipe.OutputPort<PipedAlignmentResult<H,Q>>	BlastAlignerAbstract.align(cc.redberry.pipe.OutputPort<Q> input)
<Q> cc.redberry.pipe.OutputPort<PipedAlignmentResult<H,Q>>	BlastAlignerExtAbstract.align(cc.redberry.pipe.OutputPort<Q> input, SequenceExtractor<Q,S> extractor)
<Q> cc.redberry.pipe.OutputPort<? extends PipedAlignmentResult<H,Q>>	BlastAlignerAbstract.align(cc.redberry.pipe.OutputPort<Q> input, SequenceExtractor<Q,S> extractor)

Uses of PipedAlignmentResult in com.milaboratory.core.alignment.kaligner1

Classes in com.milaboratory.core.alignment.kaligner1 that implement PipedAlignmentResult

Modifier and Type	Class and Description
class	KAlignmentResultP<P,Q> Piped version of KAlignmentResult.