Uses of Interface
com.milaboratory.core.alignment.batch.SequenceExtractor

Packages that use SequenceExtractor

Package	Description
com.milaboratory.core.alignment.batch
com.milaboratory.core.alignment.blast
com.milaboratory.core.alignment.kaligner1

Uses of SequenceExtractor in com.milaboratory.core.alignment.batch

Fields in com.milaboratory.core.alignment.batch declared as SequenceExtractor

Modifier and Type	Field and Description
static SequenceExtractor	BatchAlignmentUtil.DUMMY_EXTRACTOR

Methods in com.milaboratory.core.alignment.batch with parameters of type SequenceExtractor

Modifier and Type	Method and Description
<Q> cc.redberry.pipe.OutputPort<? extends PipedAlignmentResult<H,Q>>	PipedBatchAligner.align(cc.redberry.pipe.OutputPort<Q> input, SequenceExtractor<Q,S> extractor) Starts processing of input sequences and returns pipe of results.
<Q> cc.redberry.pipe.OutputPort<PipedAlignmentResult<H,Q>>	AbstractBatchAligner.align(cc.redberry.pipe.OutputPort<Q> input, SequenceExtractor<Q,S> extractor)

Uses of SequenceExtractor in com.milaboratory.core.alignment.blast

Methods in com.milaboratory.core.alignment.blast with parameters of type SequenceExtractor

Modifier and Type	Method and Description
<Q> cc.redberry.pipe.OutputPort<PipedAlignmentResult<H,Q>>	BlastAlignerExtAbstract.align(cc.redberry.pipe.OutputPort<Q> input, SequenceExtractor<Q,S> extractor)
<Q> cc.redberry.pipe.OutputPort<? extends PipedAlignmentResult<H,Q>>	BlastAlignerAbstract.align(cc.redberry.pipe.OutputPort<Q> input, SequenceExtractor<Q,S> extractor)

Uses of SequenceExtractor in com.milaboratory.core.alignment.kaligner1

Methods in com.milaboratory.core.alignment.kaligner1 with parameters of type SequenceExtractor

Modifier and Type	Method and Description
<Q> cc.redberry.pipe.OutputPort<KAlignmentResultP<P,Q>>	KAligner.align(cc.redberry.pipe.OutputPort<Q> input, SequenceExtractor<Q,NucleotideSequence> extractor)