Hierarchy For Package com.milaboratory.core.alignment.batch

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • com.milaboratory.core.alignment.batch.AbstractBatchAligner<S,H> (implements com.milaboratory.core.alignment.batch.BatchAligner<S,H>, com.milaboratory.core.alignment.batch.PipedBatchAligner<S,H>)
    • com.milaboratory.core.alignment.batch.SimpleBatchAligner<S,P> (implements com.milaboratory.core.alignment.batch.BatchAlignerWithBase<S,P,H>)
  • com.milaboratory.core.alignment.batch.AlignmentHitImpl<S,P> (implements com.milaboratory.core.alignment.batch.AlignmentHit<S,P>)
  • com.milaboratory.core.alignment.batch.AlignmentResultImpl<H> (implements com.milaboratory.core.alignment.batch.AlignmentResult<H>)
    • com.milaboratory.core.alignment.batch.PipedAlignmentResultImpl<H,Q> (implements com.milaboratory.core.alignment.batch.PipedAlignmentResult<H,Q>)
  • com.milaboratory.core.alignment.batch.BatchAlignmentUtil
  • com.milaboratory.core.alignment.batch.SimpleBatchAlignerParameters<S>

Interface Hierarchy

• com.milaboratory.core.alignment.batch.AlignmentHit<S,P>
• com.milaboratory.core.alignment.batch.AlignmentResult<H>
  • com.milaboratory.core.alignment.batch.PipedAlignmentResult<H,Q>
• com.milaboratory.core.alignment.batch.BatchAligner<S,H>
  • com.milaboratory.core.alignment.batch.BatchAlignerWithBase<S,P,H> (also extends com.milaboratory.core.alignment.batch.WithBase<S,P>)
    • com.milaboratory.core.alignment.batch.BatchAlignerWithBaseWithFilter<S,P,H>
• com.milaboratory.core.alignment.batch.BatchAlignerWithBaseParameters
• com.milaboratory.core.alignment.batch.HasSequence<S>
• com.milaboratory.core.alignment.batch.PipedBatchAligner<S,H>
  • com.milaboratory.core.alignment.batch.PipedBatchAlignerWithBase<S,P,H> (also extends com.milaboratory.core.alignment.batch.WithBase<S,P>)
• com.milaboratory.core.alignment.batch.SequenceExtractor<O,S>
• com.milaboratory.core.alignment.batch.WithBase<S,P>
  • com.milaboratory.core.alignment.batch.BatchAlignerWithBase<S,P,H> (also extends com.milaboratory.core.alignment.batch.BatchAligner<S,H>)
    • com.milaboratory.core.alignment.batch.BatchAlignerWithBaseWithFilter<S,P,H>
  • com.milaboratory.core.alignment.batch.PipedBatchAlignerWithBase<S,P,H> (also extends com.milaboratory.core.alignment.batch.PipedBatchAligner<S,H>)