com.milaboratory.core.alignment.benchmark

Class Challenge

java.lang.Object

com.milaboratory.core.alignment.benchmark.Challenge

public final class Challenge
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
ChallengeParameters	parameters
List<KAlignerQuery>	queries
long	seed

Constructor Summary

Constructors

Constructor and Description
Challenge(NucleotideSequence[] db, List<KAlignerQuery> queries, ChallengeParameters parameters, long seed)

Method Summary

Methods

Modifier and Type	Method and Description
NucleotideSequence[]	getDB()
cc.redberry.pipe.OutputPort<KAlignerQuery>	queries()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

parameters

public final ChallengeParameters parameters

queries

public final List<KAlignerQuery> queries

seed

public final long seed

Constructor Detail

Challenge

public Challenge(NucleotideSequence[] db,
         List<KAlignerQuery> queries,
         ChallengeParameters parameters,
         long seed)

Method Detail

getDB

public NucleotideSequence[] getDB()

queries

public cc.redberry.pipe.OutputPort<KAlignerQuery> queries()