com.milaboratory.core.alignment.benchmark

Class ChallengeParameters

java.lang.Object

com.milaboratory.core.alignment.benchmark.ChallengeParameters

public final class ChallengeParameters
extends Object

Created by dbolotin on 27/10/15.

Constructor Summary

Constructors

Constructor and Description

ChallengeParameters(int dbSize, int dbMinSeqLength, int dbMaxSeqLength, int queryCount, int falseCount, int minClusters, int maxClusters, int minClusterLength, int maxClusterLength, int minIndelLength, int maxIndelLength, double insertionProbability, double deletionProbability, double boundaryInsertProbability, NucleotideMutationModel mutationModel, int minAlignmentScoring, int maxAlignmentScoring, AffineGapAlignmentScoring<NucleotideSequence> scoring)

Method Summary

Methods

Modifier and Type	Method and Description
ChallengeParameters	setQueryCount(int newCount)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ChallengeParameters

public ChallengeParameters(int dbSize,
                   int dbMinSeqLength,
                   int dbMaxSeqLength,
                   int queryCount,
                   int falseCount,
                   int minClusters,
                   int maxClusters,
                   int minClusterLength,
                   int maxClusterLength,
                   int minIndelLength,
                   int maxIndelLength,
                   double insertionProbability,
                   double deletionProbability,
                   double boundaryInsertProbability,
                   NucleotideMutationModel mutationModel,
                   int minAlignmentScoring,
                   int maxAlignmentScoring,
                   AffineGapAlignmentScoring<NucleotideSequence> scoring)

Method Detail

setQueryCount

public ChallengeParameters setQueryCount(int newCount)