com.milaboratory.core.alignment.benchmark

Class KAlignerQuery

java.lang.Object

com.milaboratory.core.alignment.benchmark.KAlignerQuery

public class KAlignerQuery
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
Alignment<NucleotideSequence>	expectedAlignment
List<Mutations<NucleotideSequence>>	mutationsInTarget
NucleotideSequence	query
List<Range>	queryClusters
List<Range>	targetClusters
int	targetId

Constructor Summary

Constructors

Constructor and Description
KAlignerQuery(int targetId, List<Range> queryClusters, List<Range> targetClusters, List<Mutations<NucleotideSequence>> mutationsInTarget, NucleotideSequence query, Alignment<NucleotideSequence> expectedAlignment)
KAlignerQuery(NucleotideSequence sequence)

Method Summary

Methods

Modifier and Type	Method and Description
boolean	isFalse()
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

targetId

public final int targetId

queryClusters

public final List<Range> queryClusters

targetClusters

public final List<Range> targetClusters

mutationsInTarget

public final List<Mutations<NucleotideSequence>> mutationsInTarget

query

public final NucleotideSequence query

expectedAlignment

public final Alignment<NucleotideSequence> expectedAlignment

Constructor Detail

KAlignerQuery

public KAlignerQuery(int targetId,
             List<Range> queryClusters,
             List<Range> targetClusters,
             List<Mutations<NucleotideSequence>> mutationsInTarget,
             NucleotideSequence query,
             Alignment<NucleotideSequence> expectedAlignment)

KAlignerQuery

public KAlignerQuery(NucleotideSequence sequence)

Method Detail

isFalse

public boolean isFalse()

toString

public String toString()

Overrides:

toString in class Object