Uses of Class
com.milaboratory.core.alignment.benchmark.ChallengeParameters

Packages that use ChallengeParameters

Package	Description
com.milaboratory.core.alignment.benchmark

Uses of ChallengeParameters in com.milaboratory.core.alignment.benchmark

Fields in com.milaboratory.core.alignment.benchmark declared as ChallengeParameters

Modifier and Type	Field and Description
ChallengeParameters	Challenge.parameters

Methods in com.milaboratory.core.alignment.benchmark that return ChallengeParameters

Modifier and Type	Method and Description
static ChallengeParameters	ChallengeProvider.getParams1NoGap(AffineGapAlignmentScoring<NucleotideSequence> scoring, int minAlignmentScoring, int maxAlignmentScoring, double multiplier)
static ChallengeParameters	ChallengeProvider.getParamsOneCluster(AffineGapAlignmentScoring<NucleotideSequence> scoring, int minAlignmentScoring, int maxAlignmentScoring, double multiplier)
static ChallengeParameters	ChallengeProvider.getParamsTwoClusters(AffineGapAlignmentScoring<NucleotideSequence> scoring, int minAlignmentScoring, int maxAlignmentScoring, double multiplier)
ChallengeParameters	ChallengeParameters.setQueryCount(int newCount)

Methods in com.milaboratory.core.alignment.benchmark with parameters of type ChallengeParameters

Modifier and Type	Method and Description
static NucleotideSequence[]	ChallengeProvider.generateDB(org.apache.commons.math3.random.RandomDataGenerator generator, ChallengeParameters params)

Constructors in com.milaboratory.core.alignment.benchmark with parameters of type ChallengeParameters

Constructor and Description
Challenge(NucleotideSequence[] db, List<KAlignerQuery> queries, ChallengeParameters parameters, long seed)
ChallengeProvider(ChallengeParameters parameters, long seed)