public class AABlastAlignerExt extends BlastAlignerExtAbstract<AminoAcidSequence,AABlastHitExt>
| Constructor and Description |
|---|
AABlastAlignerExt(BlastDB database) |
AABlastAlignerExt(BlastDB database,
BlastAlignerParameters parameters) |
| Modifier and Type | Method and Description |
|---|---|
protected AABlastHitExt |
createHit(Alignment<AminoAcidSequence> alignment,
double score,
double bitScore,
double eValue,
Range subjectRange,
String subjectId,
String subjectTitle) |
align, align, setConcurrentBlastProcessCountpublic AABlastAlignerExt(BlastDB database)
public AABlastAlignerExt(BlastDB database, BlastAlignerParameters parameters)
protected AABlastHitExt createHit(Alignment<AminoAcidSequence> alignment, double score, double bitScore, double eValue, Range subjectRange, String subjectId, String subjectTitle)
createHit in class BlastAlignerExtAbstract<AminoAcidSequence,AABlastHitExt>Copyright © 2018. All rights reserved.