com.milaboratory.core.alignment.blast

Class AABlastHit<P>

java.lang.Object

com.milaboratory.core.alignment.batch.AlignmentHitImpl<S,P>

com.milaboratory.core.alignment.blast.BlastHit<AminoAcidSequence,P>

com.milaboratory.core.alignment.blast.AABlastHit<P>

All Implemented Interfaces:

AlignmentHit<AminoAcidSequence,P>

public class AABlastHit<P>
extends BlastHit<AminoAcidSequence,P>

Constructor Summary

Constructors

Constructor and Description
AABlastHit(Alignment<AminoAcidSequence> alignment, P recordPayload, BlastHit<AminoAcidSequence,?> hit)
AABlastHit(Alignment<AminoAcidSequence> alignment, P recordPayload, double score, double bitScore, double eValue, Range subjectRange, String subjectId, String subjectTitle)

Method Summary

Methods inherited from class com.milaboratory.core.alignment.blast.BlastHit

getBitScore, getEValue, getScore, getSubjectId, getSubjectRange, getSubjectTitle, toString

Methods inherited from class com.milaboratory.core.alignment.batch.AlignmentHitImpl

getAlignment, getRecordPayload

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

AABlastHit

public AABlastHit(Alignment<AminoAcidSequence> alignment,
          P recordPayload,
          BlastHit<AminoAcidSequence,?> hit)

AABlastHit

public AABlastHit(Alignment<AminoAcidSequence> alignment,
          P recordPayload,
          double score,
          double bitScore,
          double eValue,
          Range subjectRange,
          String subjectId,
          String subjectTitle)