com.milaboratory.core.alignment.blast

Class AABlastHitExt

java.lang.Object

com.milaboratory.core.alignment.batch.AlignmentHitImpl<S,P>

com.milaboratory.core.alignment.blast.BlastHit<S,String>

com.milaboratory.core.alignment.blast.BlastHitExt<AminoAcidSequence>

com.milaboratory.core.alignment.blast.AABlastHitExt

All Implemented Interfaces:

AlignmentHit<AminoAcidSequence,String>

public class AABlastHitExt
extends BlastHitExt<AminoAcidSequence>

Constructor Summary

Constructors

Constructor and Description
AABlastHitExt(Alignment<AminoAcidSequence> alignment, double score, double bitScore, double eValue, Range subjectRange, String subjectId, String subjectTitle)

Method Summary

Methods inherited from class com.milaboratory.core.alignment.blast.BlastHitExt

getTitle

Methods inherited from class com.milaboratory.core.alignment.blast.BlastHit

getBitScore, getEValue, getScore, getSubjectId, getSubjectRange, getSubjectTitle, toString

Methods inherited from class com.milaboratory.core.alignment.batch.AlignmentHitImpl

getAlignment, getRecordPayload

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

AABlastHitExt

public AABlastHitExt(Alignment<AminoAcidSequence> alignment,
             double score,
             double bitScore,
             double eValue,
             Range subjectRange,
             String subjectId,
             String subjectTitle)