public class BlastAlignerExt<S extends Sequence<S>> extends BlastAlignerExtAbstract<S,BlastHitExt<S>>
| Constructor and Description |
|---|
BlastAlignerExt(BlastDB database) |
BlastAlignerExt(BlastDB database,
BlastAlignerParameters parameters) |
| Modifier and Type | Method and Description |
|---|---|
protected BlastHitExt<S> |
createHit(Alignment alignment,
double score,
double bitScore,
double eValue,
Range subjectRange,
String subjectId,
String subjectTitle) |
align, align, setConcurrentBlastProcessCountpublic BlastAlignerExt(BlastDB database)
public BlastAlignerExt(BlastDB database, BlastAlignerParameters parameters)
protected BlastHitExt<S> createHit(Alignment alignment, double score, double bitScore, double eValue, Range subjectRange, String subjectId, String subjectTitle)
createHit in class BlastAlignerExtAbstract<S extends Sequence<S>,BlastHitExt<S extends Sequence<S>>>Copyright © 2018. All rights reserved.