com.milaboratory.core.alignment.blast

Class BlastDB<S extends Sequence<S>>

java.lang.Object

com.milaboratory.core.alignment.blast.BlastDB<S>

public class BlastDB<S extends Sequence<S>>
extends Object

Constructor Summary

Constructors

Constructor and Description
BlastDB(String name, String title, long recordsCount, long lettersCount, Alphabet<S> alphabet, List<String> volumes, boolean temp)

Method Summary

Methods

Modifier and Type	Method and Description
protected void	finalize()
static <S extends Sequence<S>> BlastDB<S>	get(String name)
Alphabet<S>	getAlphabet()
long	getLettersCount()
static Pattern[]	getLinePatterns()
String	getName()
long	getRecordsCount()
String	getTitle()
List<String>	getVolumes()
S	retriveSequenceById(String id)

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BlastDB

public BlastDB(String name,
       String title,
       long recordsCount,
       long lettersCount,
       Alphabet<S> alphabet,
       List<String> volumes,
       boolean temp)

Method Detail

retriveSequenceById

public S retriveSequenceById(String id)

getAlphabet

public Alphabet<S> getAlphabet()

getName

public String getName()

getTitle

public String getTitle()

getVolumes

public List<String> getVolumes()

getRecordsCount

public long getRecordsCount()

getLettersCount

public long getLettersCount()

getLinePatterns

public static Pattern[] getLinePatterns()

finalize

protected void finalize()
                 throws Throwable

Overrides:

finalize in class Object

Throws:

Throwable

get

public static <S extends Sequence<S>> BlastDB<S> get(String name)