com.milaboratory.core.alignment.blast

Class BlastDBBuilder

java.lang.Object

com.milaboratory.core.alignment.blast.BlastDBBuilder

public final class BlastDBBuilder
extends Object

Constructor Summary

Constructors

Constructor and Description
BlastDBBuilder()

Method Summary

Methods

Modifier and Type	Method and Description
static <S extends Sequence<S>> BlastDB	build(List<S> sequences)
static <S extends Sequence<S>> BlastDB	build(List<S> sequences, boolean buildIdIndex)
static String	getIdFasta(int id)
static String	getIdKey(int id)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BlastDBBuilder

public BlastDBBuilder()

Method Detail

getIdFasta

public static String getIdFasta(int id)

getIdKey

public static String getIdKey(int id)

build

public static <S extends Sequence<S>> BlastDB build(List<S> sequences)

build

public static <S extends Sequence<S>> BlastDB build(List<S> sequences,
                                    boolean buildIdIndex)