com.milaboratory.core.alignment.blast

Class BlastHit<S extends Sequence<S>,P>

java.lang.Object

com.milaboratory.core.alignment.batch.AlignmentHitImpl<S,P>

com.milaboratory.core.alignment.blast.BlastHit<S,P>

All Implemented Interfaces:

AlignmentHit<S,P>

Direct Known Subclasses:

AABlastHit, BlastHitExt, NBlastHit

public class BlastHit<S extends Sequence<S>,P>
extends AlignmentHitImpl<S,P>

Constructor Summary

Constructors

Constructor and Description
BlastHit(Alignment<S> alignment, P recordPayload, BlastHit<S,?> hit)
BlastHit(Alignment<S> alignment, P recordPayload, double score, double bitScore, double eValue, Range subjectRange, String subjectId, String subjectTitle)

Method Summary

Methods

Modifier and Type	Method and Description
double	getBitScore()
double	getEValue()
double	getScore()
String	getSubjectId()
Range	getSubjectRange()
String	getSubjectTitle()
String	toString()

Methods inherited from class com.milaboratory.core.alignment.batch.AlignmentHitImpl

getAlignment, getRecordPayload

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

BlastHit

public BlastHit(Alignment<S> alignment,
        P recordPayload,
        BlastHit<S,?> hit)

BlastHit

public BlastHit(Alignment<S> alignment,
        P recordPayload,
        double score,
        double bitScore,
        double eValue,
        Range subjectRange,
        String subjectId,
        String subjectTitle)

Method Detail

getSubjectRange

public Range getSubjectRange()

getScore

public double getScore()

getBitScore

public double getBitScore()

getEValue

public double getEValue()

getSubjectId

public String getSubjectId()

getSubjectTitle

public String getSubjectTitle()

toString

public String toString()

Overrides:

toString in class Object