com.milaboratory.core.alignment.blast

Class BlastHitExt<S extends Sequence<S>>

java.lang.Object

com.milaboratory.core.alignment.batch.AlignmentHitImpl<S,P>

com.milaboratory.core.alignment.blast.BlastHit<S,String>

com.milaboratory.core.alignment.blast.BlastHitExt<S>

All Implemented Interfaces:

AlignmentHit<S,String>

Direct Known Subclasses:

AABlastHitExt, NBlastHitExt

public class BlastHitExt<S extends Sequence<S>>
extends BlastHit<S,String>

Constructor Summary

Constructors

Constructor and Description
BlastHitExt(Alignment<S> alignment, double score, double bitScore, double eValue, Range subjectRange, String subjectId, String subjectTitle)

Method Summary

Methods

Modifier and Type	Method and Description
String	getTitle()

Methods inherited from class com.milaboratory.core.alignment.blast.BlastHit

getBitScore, getEValue, getScore, getSubjectId, getSubjectRange, getSubjectTitle, toString

Methods inherited from class com.milaboratory.core.alignment.batch.AlignmentHitImpl

getAlignment, getRecordPayload

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

BlastHitExt

public BlastHitExt(Alignment<S> alignment,
           double score,
           double bitScore,
           double eValue,
           Range subjectRange,
           String subjectId,
           String subjectTitle)

Method Detail

getTitle

public String getTitle()