Uses of Class
com.milaboratory.core.alignment.blast.BlastHit

Packages that use BlastHit

Package	Description
com.milaboratory.core.alignment.blast

Uses of BlastHit in com.milaboratory.core.alignment.blast

Classes in com.milaboratory.core.alignment.blast with type parameters of type BlastHit

Modifier and Type	Class and Description
class	BlastAlignerAbstract<S extends Sequence<S>,P,H extends BlastHit<S,P>>

Subclasses of BlastHit in com.milaboratory.core.alignment.blast

Modifier and Type	Class and Description
class	AABlastHit<P>
class	AABlastHitExt
class	BlastHitExt<S extends Sequence<S>>
class	NBlastHit<P>
class	NBlastHitExt

Methods in com.milaboratory.core.alignment.blast that return BlastHit

Modifier and Type	Method and Description
protected BlastHit<S,P>	BlastAligner.createHit(Alignment<S> alignment, P recordPayload, BlastHit<S,?> hit)

Methods in com.milaboratory.core.alignment.blast with parameters of type BlastHit

Modifier and Type	Method and Description
protected AABlastHit<P>	AABlastAligner.createHit(Alignment<AminoAcidSequence> alignment, P recordPayload, BlastHit<AminoAcidSequence,?> hit)
protected NBlastHit<P>	NBlastAligner.createHit(Alignment<NucleotideSequence> alignment, P recordPayload, BlastHit<NucleotideSequence,?> hit)
protected abstract H	BlastAlignerAbstract.createHit(Alignment<S> alignment, P recordPayload, BlastHit<S,?> hit)
protected BlastHit<S,P>	BlastAligner.createHit(Alignment<S> alignment, P recordPayload, BlastHit<S,?> hit)

Constructors in com.milaboratory.core.alignment.blast with parameters of type BlastHit

Constructor and Description
AABlastHit(Alignment<AminoAcidSequence> alignment, P recordPayload, BlastHit<AminoAcidSequence,?> hit)
BlastHit(Alignment<S> alignment, P recordPayload, BlastHit<S,?> hit)
NBlastHit(Alignment<NucleotideSequence> alignment, P recordPayload, BlastHit<NucleotideSequence,?> hit)