Package com.milaboratory.core.alignment.blast

Class Summary

Class	Description
AABlastAligner<P>
AABlastAlignerExt
AABlastHit<P>
AABlastHitExt
Blast	This class stores Blast path and manages interaction between JVM and binary blast commands.
BlastAligner<S extends Sequence<S>,P>
BlastAlignerAbstract<S extends Sequence<S>,P,H extends BlastHit<S,P>>
BlastAlignerExt<S extends Sequence<S>>
BlastAlignerExtAbstract<S extends Sequence<S>,H extends BlastHitExt<S>>	Blast aligner of query sequences with external (non-milib-managed) database of sequences.
BlastAlignerParameters
BlastDB<S extends Sequence<S>>
BlastDBBuilder
BlastHit<S extends Sequence<S>,P>
BlastHitExt<S extends Sequence<S>>
NBlastAligner<P>
NBlastAlignerExt
NBlastHit<P>
NBlastHitExt

Enum Summary

Enum	Description
BlastStrand
BlastTask